Malus sylvestris (European crab apple): 126611057
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Entry
126611057 CDS
T09027
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126611057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126611057
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126611057
mRNA degradation factors
5'-3' decay
Decapping complex
126611057
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
126611057
NCBI-ProteinID:
XP_050135199
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Position
17:complement(11124959..11131135)
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AA seq
803 aa
AA seq
DB search
MERSNGTDFRDLLDRSSSENKLFDASQYEFFGQNLVDEVELGGLDDEEDRKPLFGPVDNE
YHLFEKEEGLGLGSLSDIDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWA
QDGDFNNWLDQHMFDTEISQEGKRWSSQPQPSSALFSESKQQKPLYRTSSYPDQQPVQHH
FSSEPIVPPKSAFTSFPPPGNKFQQGSPHQLNLSAVAGGSQLPFSAPNLSPLSNSNLHMA
GLPLGLHYGGNMPQFANPGLPFNSRSQNHWVTHAGVLHSDHSSLINNILQQQLPHQDGLI
SPQLLAAQQQLQQQRLHHSVQPSLAHFAAMQSQFYGTHPSSSHKSMHGLSDVRDHRPKRG
KQRFSQGSDAGSQKSETGWIQFRSKHMTSEEIESILKMQHAATHSNDPYIDDYYHQASLS
KKAAGSRSKHPFCPSHLRESPSRGRNSTDQHTHSSVDALGRIPLASIRRPRPLLEVDPPT
GSGDGKQASEKPLEQEPMLAARIAIEDGLCLLLDVDDIDRLLQGQPQDGGVQLRRRRQIL
LEGLAASLQLVDPLGKGSHSAGLAPKDDLVFLRIVSLPKGRKLLSRFIQLLFPGSELARI
VCMTVFRHLRFLYGGLPSDPAAAETTTNLAKTVSTCINGVDLRALSACLVAVVCSSEQPP
LRPLGSPAGDGATIILKSVLERATVLLSDPHAAGSCSISNRTLWQASFDEFFGLLTKYCL
SKYETIVQSIFTQSQQSAEVIGSEATRAIHREMPVELLRASLPHTDEHQRKLLSDFSHRS
MPISGLNAHGGSGGQMNSESVRG
NT seq
2412 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctaatggtacagatttcagggacttgcttgatcgttcctcatcagagaat
aaactctttgatgcgtcacaatatgaattttttggtcaaaatctggtggacgaggttgag
ttggggggtttggacgatgaggaagacaggaaacctttattcgggcctgttgataatgag
taccatttatttgagaaagaagagggtcttggtttgggatctttatctgacatcgatgat
ctggcaagtacttttgcaaagttaaacaaagttgtaacaggaccaagacatccaggagtt
attggcgacagaggttcaggatctttttcacgggaaagttcatcagctactgattgggcc
caagacggagatttcaataactggttagatcagcatatgtttgatacagaaatttcccag
gaaggaaagaggtggtcttcacagccccaaccttcttctgctctattttcagaatcaaaa
cagcaaaagcctttgtacagaacatcttcatacccagaccagcagccagtccagcatcac
ttctctagtgaaccaattgtaccgcccaagtcagcattcacatcattccctcctcctgga
aacaagttccagcagggttcaccacatcagctgaatctttctgctgttgctggtggttcc
cagttgcctttttctgcaccaaacctttctcctttatctaactctaatcttcatatggcc
ggtttacctcttgggttgcattatggagggaacatgcctcagtttgccaaccctggcctt
cctttcaatagcaggtcacaaaatcattgggttacccatgctggagtattgcacagcgat
cattccagcctcataaacaatatattgcagcaacagctccctcatcaagatggacttatt
tccccacaattactggcagctcagcagcagctacaacagcagagattgcaccactcggtt
cagccatctttggcccattttgctgcaatgcagtctcagttttatggtactcatccttct
tcatctcataagtcaatgcatgggttgtccgacgtaagagatcatagaccgaaaagagga
aaacaacgtttttctcaaggctctgatgctggtagtcagaaaagtgagactgggtggatc
cagttcaggtctaagcacatgacatctgaagagatagagagtattcttaaaatgcagcat
gcagcaacacatagcaatgacccctatattgatgattactaccaccaggcaagtctttcc
aaaaaagcagctggctcgcgatcgaaacatcctttttgcccatctcatcttagagagtcc
ccctcccgaggtcgtaatagtactgatcagcatactcatagttctgttgacgctcttggg
agaattcctcttgcttccatacgtaggcctcgccccctccttgaagttgatcctcccact
ggttctggtgacggcaaacaggcctctgagaagcctctggagcaggaacccatgcttgct
gctagaattgccattgaggatggcctttgtctccttcttgatgttgatgacattgatcga
ctgctacaaggtcagccccaagatggtggggttcaactcaggcgaaggcggcaaatactg
ctagaagggttggcagcatcgcttcagcttgtcgacccacttggtaaaggcagccactca
gcgggtttggctccaaaggatgaccttgtgttcctacgtatagtttctcttcctaagggg
cgcaagctcctttctaggtttattcagcttctcttccctggtagtgagcttgcccgtatt
gtctgtatgacagttttccgtcatttaaggtttttgtatggtggtctaccctctgatcct
gcagctgctgagacaactactaatcttgcaaagacagtttctacatgcataaatggtgtg
gatcttcgtgcattaagtgcttgtcttgttgcagttgtttgttcatcagagcagccacca
cttcgaccccttggaagccctgctggagatggggccactattattctaaaatctgttctt
gaaagggcaactgtactcttaagcgaccctcacgctgctggaagctgtagcatttctaac
cgcaccctttggcaggcatcctttgatgaattttttggtctgctcaccaagtattgcctg
agtaagtatgaaactatagtacaatcaatatttacacagagtcagcaaagtgcagaagtt
attggttcagaggccaccagggcaatacatcgtgaaatgcctgtggagcttctgcgtgct
agtcttcctcacacagatgagcatcagcggaagcttttgtcagatttttctcatcgatca
atgcccatttctggtcttaatgcccatggtgggagcggaggtcaaatgaactctgaatca
gtgaggggataa
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