Malus sylvestris (European crab apple): 126611282
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Entry
126611282 CDS
T09027
Name
(RefSeq) ubiquitin receptor RAD23b-like
KO
K10839
UV excision repair protein RAD23
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03420
Nucleotide excision repair
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126611282
09124 Replication and repair
03420 Nucleotide excision repair
126611282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
msyl03051
]
126611282
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126611282
Proteasome [BR:
msyl03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
126611282
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
126611282
BRITE hierarchy
SSDB
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Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
CUE
UBA_3
MmeI_C
UBA_RAD5A
TECR_N
Motif
Other DBs
NCBI-GeneID:
126611282
NCBI-ProteinID:
XP_050135452
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Position
17:complement(27663964..27669774)
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AA seq
369 aa
AA seq
DB search
MKLTVKTLKGSHFEIRVQPTDAVMAVKKNIEDIQGKDNYPCGQQLLIHNGKVLKDETTLA
DNKVTEDGFLVVMLSKNKTSGLAGSSSSQPPSTNPPTTPPTTNSTNRTEAPIQEPPLQST
TSAPDTSSVHSDTYGQAASTLVAGTNLEQTIQQIMDMGGGNWDKETVTRALRAAYNNPER
AVDYLYSSIPETTEVAVPVGNFPASQATDVAPVSGAPNSAPLNMFPQETLSGAGAGALGS
LDFLRNNRQFQALRSMVQSNPQILQPMLQELGKQNPQLLRLIQEHHTEFLQLINEPVEGS
EGDIFDQPDGPDQDLPHAINVTPAEQEAIERLEAMGFDRALVIEAFLACDRNEELAANYL
LENAGDFED
NT seq
1110 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcactgtaaagaccctcaagggcagccatttcgaaattagggttcagcccact
gacgccgttatggctgtgaagaagaacattgaggatatacaaggaaaagataattacccg
tgtggacagcagttactgattcacaatgggaaggtcttgaaagacgaaaccacattggct
gacaacaaggtcacagaagacggttttcttgttgtcatgcttagcaagaataaaacttca
ggcttggcagggtcttcttcttctcagcctccctctacaaatcctcctacaactccacca
accacaaattctacaaacagaactgaagctcccatacaagaaccacccttgcagagtacc
acatctgctccagatacttctagtgtgcatagtgatacctatggtcaagctgcttcaact
ttagtcgctggtactaatcttgagcagactattcaacaaataatggatatgggtggtggc
aactgggacaaagaaacagttacacgcgccttacgagcagcttataacaatccggagcga
gcagtggactacttgtactctagtataccagaaacaacagaagttgcagttcctgtaggt
aatttccctgcaagtcaggcaactgatgttgcccccgtctctggagcgcctaactctgct
cctttgaatatgtttcctcaggaaacactctctggtgctggcgctggggcccttggatcc
ctcgacttccttaggaataatcgccagttccaagcactgcgctcaatggtgcaatcaaac
ccacaaattttgcagcccatgctgcaggagctcggaaagcaaaacccccagcttttaaga
ttaattcaggagcaccatactgagttccttcagttaataaatgaacctgttgagggttct
gaaggtgacatatttgatcagcctgacggtcctgaccaagatttgcctcatgccatcaat
gtaacccctgccgagcaggaggccattgaacgacttgaggcgatgggatttgacagagcg
ctggtcattgaggcttttctggcatgcgatcgcaacgaggaactggcagccaactaccta
ttggagaacgctggagatttcgaggactga
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integrated database retrieval system