Malus sylvestris (European crab apple): 126611501
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Entry
126611501 CDS
T09027
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
126611501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126611501
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
126611501
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
126611501
NCBI-ProteinID:
XP_050135757
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Position
17:31366555..31373742
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AA seq
909 aa
AA seq
DB search
MRSENKTNRSKQSSSGTLADISHEAVRKLLGRANKTGKRKSNNSLRPCDSIGKPESEPKS
DKDVDSRVRGNILESEGCSKDANRKVSAEEKVDGESFGCTSTNIREELDDSDWEEGSIPI
SNSAGDHEVTIELNETPDSTRKKRIRRASAEDKELAELVHRVHLLCLLARGRLIDRACDD
ALIQAALLSLLPLHVLNTSKVANLTTKDFSPLVVWFQSNFHVRSTSVSRPFSSGLKFALE
THEGTQEEIAALSVALFRALNLTTRFVSVLDVASLKPEAGKTEYYSEDVSRSSRRIFSSS
TPMVARQKISVSPAKSLSCSTSGNVYGTSQACSSESKDPTRNNTLPTSSGIAYVMNDKLS
DTSATQYDISQASVNEKSLGSKRKGDHEFEMQLQMALSATAVPTADREMGSGQKDLSGNF
ANFPDPKRMKRIVCEESQNPSQSISTAVGSRKEGSPLYWAEVYCQGKWVHIDAINGIIDG
EQKVEAIAAACKTSLRYAVAFAGNGAKDVTRRYCLKWYQIASQRVNSIWWDAVLAPLRNL
EVRATCGIVKLEKEWNGAAMDYHPTMIDVSRNSLEDMELETRALTEPLPTNQQAYKNHQL
YAIEKWLTRDQVLHPKGPVLGFCSGHPVYPRTCVQTLKTRERWLREGLQVKTNEHPVKEL
KRSPKVQKAQVPESDDFVGGNSKRTLELYGKWQLEPLHLPHAVNGIVPKNDYGNVEVWSE
KCLPPGTVHLRLPRLFYVAKRLEIDYAPAMVGFEYKNGQSFPVFDGIVVCSEFKDAILEA
YAEEEERRDAAEKKRNEGQAISRWYQLLCSIVTRQRLNNRYGDSPSSTASVDTNKVNSNI
DVQVDDRQNDKQSLACQQNVPEKRTADPSASMPEDHEHVFLTENQSFDEGNLVLTKRCQC
GFSVQVEQL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagcgaaaacaagacgaaccgttccaaacaatcgtcatcaggaactcttgccgac
atatcacatgaggctgtcagaaaacttctggggcgtgccaataaaactgggaaaaggaaa
tctaacaatagtctgcgtccatgtgattcaatcggaaagcctgagagcgagccaaaaagt
gacaaagatgtcgattcaagagtcagagggaatattttggaatctgagggttgtagtaaa
gatgcaaatcgaaaggtctctgcagaagagaaagttgatggggaaagctttggatgcact
tccacaaacattagggaagaactggatgactcagattgggaagagggttcaatacccatt
tctaattccgctggcgatcatgaagtgactattgaattaaatgagacaccagattctaca
agaaagaaacgtatccgtcgggcttctgctgaagataaggaactggctgagcttgttcat
agggttcatttactttgtttacttgcacggggaaggttgattgatagagcttgtgatgat
gctcttattcaggccgctttactttctctgcttccactacacgtgctgaatacatccaag
gttgcaaaccttactacaaaggattttagtcctctagtcgtctggtttcaaagtaacttc
catgttcgaagtacaagtgtgagcaggccattttcttcgggtctgaaatttgcccttgaa
actcatgaaggaactcaagaagagattgctgctttgtctgtggcactctttagagcatta
aatctgacaacgcggttcgtctcggttttggatgttgcctctttaaaaccagaagctggc
aagaccgaatattatagtgaagatgtaagcagatcgagtaggagaatattcagttcttcg
accccaatggtggctagacaaaagatctctgtctctcctgccaaatcactttcatgtagt
acgagtggcaatgtctatggaacttctcaggcgtgttcaagcgaaagtaaggaccccaca
agaaacaatactctgcccacaagctctggtatcgcttatgtgatgaatgataaattgtca
gatacttctgcaacacaatatgacatctctcaagcatccgttaatgagaaatctctggga
tcaaaaaggaaaggggatcatgagttcgaaatgcagttgcaaatggctctttctgccaca
gcagtgccgactgcagatagagaaatgggttcaggtcagaaagacttgagtggaaatttt
gcaaatttccctgacccgaaaagaatgaaaagaattgtttgtgaagaatcacaaaacccc
tcccagagtatctctactgcagttggctcgagaaaagaaggatctcctttgtactgggca
gaagtatactgtcaggggaagtgggtgcatatagatgctatcaatggaattattgatgga
gagcagaaggttgaagccatagctgctgcatgcaaaacgtctttgagatatgcagttgct
tttgctgggaatggggcgaaagatgtgactcgcaggtactgtctgaagtggtatcagata
gcatcccaacgagtcaattcaatatggtgggatgcagtactggcacccttgagaaattta
gaggtgagagcaacatgtggcatagttaagttggagaaagaatggaatggtgcggccatg
gattatcatccaactatgattgatgtttcccgaaattctcttgaggatatggagttggaa
actagggccttaactgagcctcttccaactaatcagcaggcctataaaaaccatcaacta
tatgctatagaaaaatggcttacaagggatcaggtacttcatccgaagggccctgttttg
ggtttttgttctggtcatccagtttaccctaggacatgtgtgcaaacactaaagacaaga
gaaagatggctgcgggaggggctacaagttaaaaccaatgagcatcctgtgaaggagttg
aaacgttctccaaaagtccaaaaagcacaggtacctgaatctgatgattttgttgggggt
aattcgaaacgaactcttgaactttatgggaagtggcaacttgaaccattgcatctgcct
catgctgttaatgggatagtgccaaagaatgattacggtaatgtggaagtatggtctgag
aagtgccttccgccagggactgtgcatttgaggttgccgaggctgttttatgttgccaag
agactggaaattgattatgctcccgccatggttggtttcgaatataaaaatggtcaatcg
tttcctgtctttgatggtatagtagtctgctctgagttcaaggatgcaatattggaggca
tatgcagaggaagaggaaagaagagacgctgcagaaaagaaaagaaacgaagggcaggct
atttctcggtggtatcagcttctctgttcgattgtaactcgacaaaggttaaacaaccgc
tatggggactccccctcttctacagcatcagttgacaccaacaaggtgaatagcaacata
gacgtacaggttgatgatcgtcagaatgataagcaatctcttgcatgccagcaaaatgtg
cctgaaaagaggacagctgatccatcagcttccatgcccgaagatcacgagcatgtattc
ttgaccgaaaaccagagttttgatgagggaaacttggtgctgacaaagaggtgtcaatgt
ggattctcagtgcaagttgaacaactgtag
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