Malus sylvestris (European crab apple): 126611581
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Entry
126611581 CDS
T09027
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126611581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126611581
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126611581
Complex C
U5 SnRNP specific factors
126611581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
126611581
NCBI-ProteinID:
XP_050135839
LinkDB
All DBs
Position
17:26017656..26028512
Genome browser
AA seq
2347 aa
AA seq
DB search
MWNNGQIAPPGTGGSSIPPPPAAQPSYTVLPSPADAEAKLEEKARKWQQLNSKRYSDKRK
FGFVESQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENMPMPW
EQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFY
YDPLIHPIPSSNKDRREKKTSDEEEDDIFTLPDVVEPFLNDTQLYTDTTAAGISLLFAPR
PFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFTPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQSIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSM
CGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRFSQQTDVGVSHFRSGMSHEGDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKASNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVITEPHHIW
PSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPSALPDHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENTKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDTGPWNYNFMGVKHTPSMKYGIKLGTPREYYHEDHRPTHYLEFSNLEEGDTVEG
DRDDTFT
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccgcctggcaccggcggttcgtctattccgccaccg
ccggcggctcagccatcttacacggtgttgccttctccagctgatgccgaggctaagctt
gaagagaaggcccggaaatggcagcagcttaattccaagcggtatagcgataagcgcaag
ttcggcttcgtcgagtcgcagaaggaggacatgcctcctgaacatgtcaggaagatcatt
agggaccacggagatatgtcctcaaagaaatttcgtcatgataaacgagtgtatctcgga
gcacttaagtttgtcccccatgccgtttacaagctccttgagaacatgccaatgccatgg
gagcaggtccgggatgtgaaggttttgtaccatataactggggcaattacatttgtaaat
gaaataccttgggttgttgaacccatctatttggctcagtggggttcaatgtggattatg
atgagaagggagaagagggatcgtcggcatttcaaaagaatgcggtttccaccatttgat
gatgaggaacctccgttagactatgctgataatctgttagacgttgatcccctagagcca
attcaattggagttggatgaagaagaagattctgctgtgtatacatggttttatgaccat
aaacctcttgttaagacaaagctcataaacggcccaagttataggaagtggcatctgtcg
cttcccatcatggcaactcttcatcgactagctggacaactgctttctgatcttattgac
cgcaattatttctaccttttcgacatggagtctttttttacagccaaagcactcaatatg
tgcattccaggtggacctaaatttgaaccattgtatcgggatatggagaaaggggatgag
gattggaatgagtttaatgacatcaacaaactcattattcggtcacctctcagaacggag
tacaggattgcattccctcatctctacaacaatagacccaggaaggtcaagctttgtgtg
tatcacacacccatggtgatgtacataaaaaccgaggatcctgatctacctgcgttttat
tatgatccgttgatacacccaatacccagcagtaataaggataggcgtgagaagaaaact
tctgatgaggaggaagatgatatctttacattgccagatgtggtggaaccatttctcaac
gatactcagctttatactgacaccacagctgccggaatctctcttttgtttgccccacgc
ccttttaacatgagatctggtcggacccgtcgagcagaagatataccccttgtgtctgag
tggtacaaggaacattgtcctccttcatatccagttaaagttcgggtcagctatcagaaa
ttgctgaagtgttttgtattgaacgagctgcatcatagaccacccaaagctcaaaagaag
aaacatttgtttcgatctcttcaagctaccaagttcttccaaactacagaacttgattgg
gctgaagcgggtcttcaagtctgtaagcagggttataacatgcttaatctgttgatccac
aggaaaaatttgaattaccttcaccttgattataatttcaatctgaagcctgtgaagact
ttgacaacaaaagagcgtaagaaatctcggtttggtaatgcttttcatctgtgccgtgaa
atcttgcggttgacaaagcttgtagttgatgccaatatccagttccgtttgggtaatgtt
gatgcctttcaattggctgatggcctacaatacacgttttctcatgttggtcagttgact
ggaatgtaccgttacaagtataggttgatgaggcagattagaatgtgcaaagatttgaag
cacttgatttactaccggttcaatactgggcctgtgggaaaaggaccaggatgtgggttc
tgggcaccaatgtggagggtgtggttgttcttccttcgtggcatagtacctcttctggaa
cggtggctgggaaatttacttgcacgacagtttgaagggcgccattcaaaaggagtggca
aagactgttactaagcagcgtgttgaaagccatttcgacttggagcttcgagctgctgtg
atgcatgatgttcttgatgccatgccagagggtatcaagcaaaataaagccagaactatc
ttgcaacatctcagtgaggcatggcgctgctggaaagctaacatcccttggaaggttcct
ggtttgcctgttcctattgaaaatatgattcttcgttatgtgaaatcgaaggcagactgg
tggacaaatgttgctcactacaatcgtgaacgtataagaagaggtgctactgtagataag
acagtttgtcggaagaatctaggaagattaactcgtctctggctaaaggcagagcaggag
cgtcagcacaattatttgaaagatggtccatatgttacaccagaagaggcagttgcaatt
tacaccacaaccgtgcactggttggaatcaagaaagtttacacccattccgttccctcca
ttgtcatacaaacatgacaccaagcttctgatccttgctctggagaggttaaaggagtct
tatagtgtggctgtaagattgaaccagcttcaaagagaagagttgggtctcattgaacaa
gcctatgacaatcctcacgaggcattgtcacgaattaagcgccacttgctcactcagcgt
gcattcaaagaagttggtatagagttcatggatttgtatagctatctgattccagtttat
gagatagaacctcttgagaagattacggatgcatatcttgatcaatatttatggtatgag
ggtgacaaacgtcatctctttccaaactggatcaagcctgcagattcagagccacctcca
ctcttggtttataaatggtgtcagggaataaacaatttacagagcatatgggacacgagt
gaggggcagtgtgtggtgatgcttcaaacgaagtttgagaagttttttgaaaagattgac
ttgacaatgctaaataggctcctgcgtcttgttcttgaccataatattgctgattatgtc
actgcaaagaacaatgtggtattgtcttacaaagatatgagtcatacaaattcgtatggt
ctcatacgtggtcttcagtttgcatcttttgtagtgcaatattatgggcttgtgttggat
ctgttacttcttgggttgactcgggccagtgaaattgccggtccaccccagatgccaaat
gaattcatcacctattgggacacaaaggttgagacacggcatcctatcaggctgtattct
agatacatagacagggtgcatatcttgttccgcttcacccatgaggaggctcgtgatctt
attcagcgatatcttactgagcatccggaccccaataatgaaaatatggttggatacaat
aataagaaatgctggccaagagatgccagaatgaggctcatgaaacatgatgtcaatctt
gggaggagtgttttctgggatatgaagaaccgtctccctcgaagcatcacaactttggag
tgggagaacagctttgtttctgtttacagcaaggataatccaaatttgcttttcagcatg
tgtggatttgaagttcggatacttcccaagataagaatgagtcaagaagcattcagcaac
actagggatggggtttggaatttgcagaatgagcagacaaaggagaggactgcagttgct
ttcttacgtgttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattctt
atgtcctcagggtctacaacatttacaaaaattgtcaacaagtggaatacagcgcttatt
ggtctaatgacttacttccgtgaagcaactgttcatacacaagaactgttggatttgctt
gtcaaatgtgaaaataagattcagacccgtattaagattgggttgaattcaaagatgcct
agcaggtttccacctgtcatcttttacacaccaaaggaaattggagggcttggcatgtta
tctatggggcacatattgattccacaaagtgacctccgcttcagtcagcagactgatgtt
ggtgtgagtcattttaggagtggaatgagtcatgaaggggaccagctgattccaaatctt
taccgttacatacaaccatgggagagtgaatttatagattcacaacgtgtttgggcagaa
tatgcactgaaaaggcaggaagctcaggcgcaaaataggcgtctgactcttgaagatttg
gaagattcatgggataggggaataccacgcataaatactttgttccaaaaggaccggcat
actttagcatatgacaaaggttggagagttcggacagattttaagcagtaccaagtgttg
aaacaaaatcctttctggtggacacaccagaggcatgatgggaaattgtggaacttaaac
aactaccgaactgatgtgattcaagcccttggaggtgttgaaggaatccttgagcatacg
ttattcaaaggaacatactttcctacctgggaggggctcttctgggagaaagcatctggt
tttgaggagtcgatgaagtataaaaagttgacaaatgcacagagatctgggctcaatcaa
atccccaatcgtaggtttactctctggtggtcacctaccataaatcgggccaatgtatat
gttggtttccaagtgcagctagatttaactggaatatttatgcacgggaagattccaacc
ttgaagatatcactgattcagatattccgtgctcacttgtggcagaagattcatgaaagt
gttgtcatggatctctgtcaggttttggatcaagagttggatgctttagaaattgaaact
gtgcagaaggaaacgatacatcccaggaagagttacaaaatgaacagctcttgtgctgac
attcttctgtttgctgcccatagatggccaatgtcgaaacctagtcttgttgctgagcca
aaggatgtgtttgaccagaaagcgagcaataagtactggatagatgtacaactccgttgg
ggagattatgattctcacgatattgagcgttacacccgagctaagtttatggactatacc
actgacaacatgtccatctatccatctcccacaggggtgatgattggtcttgatttggca
tataatttgcattctgcatttggtaactggtttcctggttcaaaaccgctgcttcaacag
gcaatgaacaagatcatgaaatcaaatccagccttgtatgtcctgagggagcgaataagg
aaaggattgcagctatattcttccgagcctacagagccatatttgtcatcccaaaactat
ggggagatcttcagcaatcaaatcatttggtttgttgatgataccaatgtgtatcgtgtt
acaatccataagacatttgaaggaaatctcactacgaaaccaatcaatggtgctatcttc
atattcaatccaaggacggggcagctattcctgaaggttatccacacaagtgtgtgggca
ggacagaagcgtcttggtcagttggctaaatggaaaactgcagaagaagttgctgcactt
gtgcgttctttgccagtggaagaacagccaaaacaaattattgtgactcgcaagggaatg
ttggatcccttagaggttcatttgctcgatttccccaacatagtcataaaaggaagtgag
ctccagcttcctttccaagcgtgtttgaagatcgagaaatttggtgatctgatattgaag
gctactgaaccacagatggttcttttcaatatttatgatgattggttgaagagtatttca
tcatacactgcattctctcggttaattttgattcttcgtgcacttcatgtgaacaatgag
aaggcaaagatgttactgaagcctgataaaacggtcattaccgagccacatcacatctgg
ccttctctttctgatgatcaatggatgaaggttgaggttgctctaagggatctcatattg
tcagactacgcaaaaaagaacaatgtgaatacatcagccctaacacaatctgagatccgt
gacattatactcggagctgagatcaccccaccttctcaacagagacagcaaattgcagaa
atagaaaaacaggccaaagaagccagtcagctgacagcagtcacaacaaggactacaaat
gtgcatggtgatgaactcattgtcaccactacaagtccctatgagcaaagtgcatttggc
tccaaaactgattggcgtgtgagagcaatatcagctacaaatctatatcttcgtgtcaat
catatatatgtgaattcagaagatataaaggaaacgggttacacctatattatgcctaag
aacattttgaaaaagttcatctgcattgcggatctgaggacgcaaatagctggttacttg
tatggcataagcccaccggacaaccctcaggtcaaggaaatccgctgcattgcaatgcca
ccacaatgggggacccaccaacaagttcatcttccatcagctcttcctgatcatgatttc
ctcaacgatttggagcctctgggatggatgcacacccagccaaatgagcttcctcagctt
tctcctcaggatctcacttctcatgccaagattttagagaacaccaagcaatgggatggg
gagaaatgcatcattttaacctgcagtttcactccaggttcctgctctttaaccgcatac
aaacttactccatctggttatgaatggggacgtgtcaataaagacacaggaagcaatcct
catggataccttcccactcattacgagaaggttcagatgcttctcagtgaccgcttcctt
ggtttctatatgattccggacaccggtccatggaactacaacttcatgggggtgaagcat
acacctagcatgaaatacggcatcaagcttggaacgcccagggagtactatcacgaggac
cacaggccgacccattaccttgagttcagcaacctggaggagggtgacacggtggaagga
gatcgcgatgacactttcacataa
DBGET
integrated database retrieval system
