Malus sylvestris (European crab apple): 126612088
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Entry
126612088 CDS
T09027
Name
(RefSeq) polyadenylate-binding protein 6-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126612088
09123 Folding, sorting and degradation
03018 RNA degradation
126612088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126612088
03041 Spliceosome [BR:
msyl03041
]
126612088
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126612088
mRNA cycle factors
Stress granule specific factors
126612088
Spliceosome [BR:
msyl03041
]
Complex C
Other components
Complex C specific factors
126612088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_10
RBD_DEAH11
RRM_RdRP1_2
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
126612088
NCBI-ProteinID:
XP_050136348
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All DBs
Position
17:complement(20632915..20641349)
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AA seq
608 aa
AA seq
DB search
MAAELSDPETPMPLPPPPPLLPTLPVRPPAPVDPEIFSLYVGDLDPQVTEEDLLTTFRFM
GPIASVRLCRDSHSGESLRYGYVNFYSHSHASKAMACLNHTELKGKTMRIMWSQRDSVPR
KTGLGNVFVKNLDPEITSTHLQDMFGEFGTILSCKVAEQNGKSKGFGFVQFDKEESAVAA
VNALNDTIIKGKKLYVSKFVKKSDRIPAQNESKFTNLFVKNLDEHVTEDLLREMFSRYGS
VYSLAIMKDEKGKSKGFGFANFESPEVAKKAVECMNGALLGSKHLFVGRAQKKAEREKFL
KCKEEMLNSEIEKLKSMNLYVKNLAESVDDSKLGEHCSAFGKILSAKVMRDGNGMSRGFG
FVCFSTLQEAAKALSNLNGAMLEGRKLYVAVAQSKEDRCKAMQDYYTLQLPQRSLQSPNW
PALHPVQYSVSPRPPTAPLLCPPVMYQSFGTNVVADYPFVLSRESQLGSSNGNDNFQNKS
RTYANSNVHTNSGNHGGYEATGYRKKVYRQSGATAGSSRSATTGGRVLLTEASSTGNSNL
KTTPRDRRHSFAENLEPGRAVQITGTSGMLWELNSSEKAAAQVLKVANGTRTSADHHPLF
AKSGRYLS
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagagctgtcagaccctgaaacaccaatgccgctaccgccaccaccaccacta
ctgccgacgctaccagtacggccgccggcgccggtcgatcctgagatattctctctgtat
gtgggcgacctggacccacaggtcaccgaggaagacctcctcactacttttcgtttcatg
ggtcccatcgcctccgtccgtctctgccgtgactcccactccggcgagtccctccgctac
ggctatgtcaacttctactcccactcccacgcatccaaggctatggcttgtctgaatcac
actgagctgaaagggaaaaccatgagaataatgtggtctcagagggattctgttccaagg
aaaactggtcttggcaatgtctttgtgaagaaccttgaccctgaaatcaccagcactcac
ttgcaggacatgttcggggaattcgggactatactttcttgcaaggtagccgaacaaaat
gggaagagcaagggtttcgggtttgtccagtttgacaaagaggaatcggctgtggctgct
gtcaatgctctcaatgatacaatcattaaggggaagaagctatatgtgtcgaaatttgtt
aagaaaagtgacaggataccagcccagaatgaatccaaatttacaaatctgtttgtgaag
aatcttgatgaacatgtaactgaggatctgcttcgagagatgttctctcggtacggaagt
gtttatagtcttgccatcatgaaggatgagaaagggaagtcaaaaggttttgggtttgct
aactttgagtcgccagaagtggctaagaaggctgttgagtgcatgaatggtgcactgctg
ggatcaaaacatttgtttgtaggaagggctcaaaagaaagctgagagggaaaagtttcta
aaatgtaaagaggaaatgctgaacagtgagatcgagaaacttaagtctatgaatctctat
gttaagaatttagctgaatctgttgatgatagcaaattaggagaacattgcagtgccttt
gggaagattctgtcggccaaagtgatgcgtgatggtaacgggatgagcagaggttttggt
tttgtttgcttctcaactcttcaagaagctgccaaagctctcagtaatcttaatggagct
atgttggaaggaagaaaactttatgtggctgtagctcaaagcaaagaagatcgctgcaag
gctatgcaagattactatactcttcagctgccacaaagatctttgcaatctccaaactgg
cctgccctgcacccggtccagtatagcgtttccccaaggccacctacagctcctctgcta
tgcccgccagtcatgtatcaaagttttggtactaatgtcgttgcggattatccttttgtt
ctaagcagagaatcacagttgggtagcagcaatggaaatgataatttccagaataagtcc
aggacatatgctaactcaaatgttcataccaactctgggaaccatggaggttatgaagct
acaggataccggaagaaggtttacagacagagtggagccactgcaggaagttcaagatca
gcaactacaggaggcagagttcttcttacagaagcatcatccactggaaactccaacttg
aagacaactccaagggatcggcgccactcttttgctgagaatcttgagcctgggcgtgca
gtacagataacaggaacgtcgggaatgctgtgggagttgaacagttctgagaaagcagca
gctcaagttttgaaggtggcaaatggtaccaggaccagcgcagatcatcaccctctgttt
gctaagtctggccgctacttgagctaa
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