KEGG   Malus sylvestris (European crab apple): 126612211
Entry
126612211         CDS       T09027                                 
Name
(RefSeq) uncharacterized protein LOC126612211
  KO
K12828  splicing factor 3B subunit 1
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    126612211
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:msyl03041]
    126612211
   03036 Chromosome and associated proteins [BR:msyl03036]
    126612211
Spliceosome [BR:msyl03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    126612211
 Complex B
    126612211
 Complex C
   U2 SnRNP specific factors
    126612211
Chromosome and associated proteins [BR:msyl03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    126612211
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N DUF58
Other DBs
NCBI-GeneID: 126612211
NCBI-ProteinID: XP_050136523
LinkDB
Position
17:complement(15830283..15834396)
AA seq 1266 aa
MASDDEIEKTQEERKRMEKQLASLTSVTFDTDLYGGTDKGAYVSSIPVNDDDDNAEAMDN
EIARRMAASYTAPKSVLNERPRGGDADEDLGFKKPQRIIDREDDYRQRRLNRIISPERHD
PFASGEKTPDPSVRTYADVMREEALKREKDETLKLIAKKMKEKEEAPPEKEDKPAAAEAV
PQKRRNRWDQSQDGDGGGKKAKTSDWDLPDTTPGKWDATPTPGRVSDSTPSLGRRNRWDE
TPTPGRVADSDATPAGAVTPGATPAGMAWDATPKLPGMATPTPKRQRSRWDETPASMGSA
TPMAGATPAAAYTPGVTPVGGVELATPTPGAINVRGAITPEQYNLLRWEKDIEERNRPLT
DEELDAMFPQEGYKVLDPPSSYVPIRTPARKLLATPTPMGTPMYSIPEENRGQQFDVPKE
LPGGLPFMKPEDYQYFGALLNEDEEEELSPDEQKERKIMKLLLKVKNGTPQQRKTALRQL
TDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIE
PLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL
GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIENGLSDENQ
KVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDA
MYASYYTKEVMVVLIREFQSPDEEMKKIVLKVVKQCVSTEGVEPEYIRSDILPEFFKNFW
VRRMALDRRNYRQLVETTVEIANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVVNL
GASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGLRVKPYLPQICGTIKW
RLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRI
CFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAIEGMR
VALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVASYPMLEDEEHNVYTRP
ELMMFV
NT seq 3801 nt   +upstreamnt  +downstreamnt
atggcatccgacgacgagatagagaagacgcaggaagagaggaagaggatggagaagcaa
ttggcctccctcacctccgtcaccttcgacacagacctctacggcggcaccgacaagggc
gcatacgtctcgtcgatccctgtgaacgacgacgatgacaacgcggaggccatggacaac
gagattgctcggaggatggcggcgtcgtacacggcgcccaagtcggtgttgaacgagagg
ccgagaggcggcgacgccgatgaggatttggggttcaagaagccgcagaggattatcgat
cgggaggatgattatcgacagcggaggttgaaccggatcatatcgcctgagcggcacgac
ccgtttgcgtccggggagaagactccggacccgtcggtgaggacttatgccgatgtgatg
agggaggaagccctgaagagggagaaggatgagactctgaagcttattgctaagaagatg
aaggagaaagaggaggcgccgccggaaaaggaggataagcctgctgctgctgaggcggtg
cctcaaaagaggaggaatcggtgggaccagtctcaggatggtgatggtggaggcaagaag
gcaaaaacgtcggattgggacttgccggatacgacgccaggaaagtgggacgcaactccg
acgccagggagggtttcggattcgactccatcactggggaggaggaaccgctgggatgag
acacccactccggggcgggtggcagattcggatgctactccagctggtgctgtcactccc
ggtgccacccctgctgggatggcttgggatgcgactccgaagcttcctgggatggccaca
ccgacaccgaaacggcagaggtcaaggtgggatgagacccctgcctcaatgggcagtgcg
accccaatggctggggcaacccctgctgctgcctatacacctggtgtgacccctgtaggt
ggagttgaacttgctaccccaacccccggggctattaatgtgaggggagccattacgcca
gagcagtataatctattgaggtgggagaaggatattgaagagaggaatagaccattgact
gatgaagagctggatgctatgtttcctcaagaagggtataaagttttggacccaccgtct
tcttatgtgccgattaggactccggcgaggaaacttcttgctacccccactccaatgggg
actcctatgtattctattccggaagagaatcgtgggcagcagtttgatgtgcctaaggag
ttgcctggtgggttaccgtttatgaagcctgaagactatcaatactttggggcattgctg
aatgaagatgaggaggaggaattgtcccctgatgagcagaaagagcggaagattatgaag
cttctgcttaaagttaagaatggaacaccacagcagagaaagacagcattgaggcagctt
actgataaggctcgtgagtttggtgctggccccttgtttaaccgcattttgcctctgctt
atgcaacccactttggaagaccaagagaggcatcttttggttaaggttattgatcgagtg
ctttataaattggatgagttggtacgtccttatgtgcataagattcttgttgttattgaa
cctttgttgattgatgaagactattatgcgcgtgttgaagggagagaaattatctccaat
cttagtaaagcagctggtttggccactatgattgcagccatgcgtccggatattgataac
attgatgaatatgttaggaacactactgccagagcttttagtgttgttgcttctgcgctt
ggtatacctgcactgttgccctttttgaaagctgtgtgtcagagcaagaagtcgtggcaa
gcacggcacactggaatcaagattgttcagcagattgccattttgatcgggtgtgctgta
cttccccacttgaggtcccttgtggaaattatagagaatggtctgagcgatgaaaatcag
aaggttcggacaattactgctctatctcttgctgctcttgctgaggcagctgccccatac
ggtattgagagctttgactctgtgttgaagccattgtggaagggtattaggtctcaccgt
ggtaaggttttggctgccttcttgaaggcaattggttttattattccccttatggatgca
atgtatgcaagttactatacaaaggaagtgatggttgttttgattagagagtttcagtct
cctgatgaagagatgaagaaaattgtgctcaaagttgtcaaacagtgtgtgagtacagaa
ggtgtagagccggagtatataagaagtgatattcttcctgagttctttaaaaacttttgg
gttagaaggatggctttggataggagaaactacaggcaattggtggaaacaactgtagag
atagcaaacaaagtgggtgttgctgatatagttgggagaattgttgaggatctcaaagat
gagagtgaaccgtataggagaatggttatggagacaatcgagaaggtggttgtgaacttg
ggtgcatctgacattgatgctcggttggaggagcttctcattgatggtatcctttatgct
ttccaagagcagaccagtgatgatgcaaatgtgatgctgaatggttttggtgcagttgtg
aattctcttggtctgagggtgaaaccttaccttcctcagatttgtggtaccattaagtgg
cgtttgaataacaagagtgcaaaggtcagacagcaagctgcagatcttatttcgagaatt
gctgttgtcatgaagcagtgccaagaggagcaactgatgggtcatcttggtgttgtcttg
tatgagtatttgggagaagagtatccagaagttttgggatcaattctaggagcgctgaag
gcaattgtgaatgttattggtatgacaaagatgactcctcctataaaggatttgcttccc
aggttgactccaattttgaagaataggcatgagaaagtccaggagaactgtattgacctt
gttggtcgtattgctgatcgcggtgctgagtttgttccagcaagggagtggatgaggatc
tgttttgagcttcttgagatgctcaaggctcataagaagggtatccggcgagctacagtg
aatacttttggttacattgccaaagccattggtccacaagatgtcctcgcaactctattg
aacaatctcaaagtgcaggagcgtcagaaccgtgtctgcaccactgtggcaatcgcaata
gtagctgaaacctgttcgcctttcacagttcttccggccctgatgaatgagtatcgtgtt
ccagagcttaatgtgcagaatggtgttttgaagtccctctcgttcttgtttgagtacatc
ggtgaaatggggaaagactatatctatgcagtgaccccgttgcttgaggatgccctcatg
gatagagatctggttcacagacaaactgccgcttctgctgtaaagcacatggctctggga
gtagcgggattgggatgcgaggacgctttagtccacttgctgaactacgtctggccaaac
atatttgagacatccccacacgttatcaacgcagtcatggaagcaattgaagggatgaga
gtggcattaggtgctgcggttgtgctcaactactgtctccaggggctgttccatcctgct
aggaaggttagagaggtgtactggaagatttacaactcactgtatattggagctcaagat
gctcttgttgcatcgtacccgatgcttgaggatgaggagcataacgtatataccaggccc
gagctaatgatgtttgtatga

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