Malus sylvestris (European crab apple): 126614197
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Entry
126614197 CDS
T09027
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
126614197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126614197
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
126614197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WD40_Prp19
WDR55
zf_RING_Vps8_fungal
Beta-prop_EML_2
zf-RING_2
EIF3I
ANAPC4_WD40
Beta-prop_WDR11_2nd
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
126614197
NCBI-ProteinID:
XP_050137740
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All DBs
Position
3:12791657..12812196
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AA seq
958 aa
AA seq
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MAPIPPDNGVEGDDEREEEGEEEEEEEEEEEEEEEEEEPRLKYQRMGGSIPTLLASDVAS
CIAVAERMIALGTHGGTVHILDFLGNQVKEFPAHTAAVNDLSFDIEGEFIGSCSDDGSVV
INSLFTDEKMKFEYHRPMKAIALDPDYARRSSRRFVAGGLAGHLYFNTKRWLGFKDQVLH
SGEGPIHAVKWRTSLIAWANDAGVKVYDTANDQRITFIERPRGSPRPELLLPHLFWQDDS
LLVIGWGTSIKITSIKTNQSRATNGTYKHVPMSGMNQVDIVASFQTSYFISGIAPFGDTL
VILAYIPGEEDGEKEFSSSVPSRQQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYKAKD
YSLAHAPFSGSSYAGGRWAEGDEPLYYIVSPRDVVIAKPRDAEDHIAWLLQHGWHEKALA
AVEAGQGRSELLDEVGSRYLDHMIVERKYAEAASVCPKLLRGSASAWERWVFHFAHLRQL
PVLVQYIPTENPRLRDTAYEVALVALATNPSFHKELLSTVKSWPPVIYSSLPVISAIEPQ
LNTSSMTDALKEALAVLYEIDGQYEKAFALYADLLKPDIFSFIEKHNLYDSIREKVVQLM
MLDCKLAVPLLIQNKDLITPSEVVKQLLNAIDKCDSRYFLHAYLHPLFEADPHSGKEFHD
MQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICIGRDLLREQVFILGRMGNAKQALAVII
NKLGDIEEAVEFVNMQHDDELWEELIQQCLDKPEMVGVLLEHTVGNLDPLYIVNMVPNGL
EIPRLRDRLVKIVTNYRTETSLRHGCNDILKADIVNLLVKYYKEATHGIYLSNEEDEARS
KRNDSRASQVIEKSVGVRSMEVKSKPRGGARCCMCFDPFSIQSVNVIVFFCCHAYHMTCL
MDSTYTSEMKGSVATPSERVDDYGYDDSDVDDNGDDDTQSGGSRMRCILCTTAASGVK
NT seq
2877 nt
NT seq
+upstream
nt +downstream
nt
atggctccgattccgcccgataacggcgtcgaaggagacgatgagagagaggaagagggc
gaggaggaagaagaagaggaagaggaagaagaggaggaggaggaagaggaggagccgagg
ctcaagtaccagcgaatgggaggcagcattcccacgctattggctagcgacgtggcgtcc
tgcatcgccgtcgcggaacgaatgatcgcgctcgggactcacggcggcaccgttcatatt
ctcgattttctcgggaatcaggttaaggaattccctgctcatactgctgcagtgaatgat
cttagcttcgacatagaaggtgaatttataggaagctgttcagacgatgggtctgttgta
ataaatagtcttttcactgatgagaaaatgaagtttgagtatcatcgcccaatgaaagct
attgcactagacccagattatgcaagaagatcatctagaagatttgtagctggtggttta
gctggtcatttatattttaatacaaaaagatggctgggctttaaagatcaggttttgcac
tctggtgaaggtcctatacatgcggtgaagtggagaacaagtctcattgcctgggcaaat
gatgcaggtgttaaagtgtacgatactgcaaatgatcaacgtataacattcattgaaagg
ccacgaggaagcccacgtcctgagcttttgctccctcacttattttggcaggatgactca
ttgttggtcattggctggggaacatcaatcaaaatcacatcgataaaaacaaatcagtca
agagccaccaatggaacatataagcatgtcccaatgtctggtatgaaccaggtggatatt
gtggcatcctttcagaccagctattttatttccgggattgccccttttggtgatactttg
gtcattctagcatatatccctggtgaagaagatggggaaaaggaatttagcagctctgtt
ccatcacgacagcagggaaatgcacagagaccagaagtacgtattgtaacatggaacaat
gatgaactttcaacagatgccttacctgtacacggctttgagcattacaaggcaaaggac
tattcccttgctcacgctcctttctcaggtagcagctatgctggcggccggtgggctgaa
ggtgatgaaccactgtactatattgtttccccaagggatgtagtcattgcaaaaccaaga
gatgctgaagatcatattgcttggcttcttcaacatggttggcatgaaaaagctttggct
gcagttgaagcaggccagggacggagtgaacttcttgatgaggttggttctagatacctt
gatcatatgattgtggaaagaaaatatgctgaagccgcatctgtatgtcctaaattgttg
cgaggatctgcttcagcatgggaaagatgggttttccactttgctcatttgcgtcagctt
cccgtattagtccaatacattccaacagaaaacccaagacttcgtgatactgcttatgag
gttgctcttgtagctctcgctacaaatccatcttttcataaggagcttttgtcaactgtt
aaatcttggccacccgtgatctactcttcattgcctgttatctcagctatagaacctcag
cttaatacatcgtccatgacagatgcccttaaggaggcactagcagtgttgtatgagatt
gatgggcaatatgagaaagcatttgcactatatgctgatcttttgaagccagacatattt
tccttcattgaaaagcacaatttgtatgattctattcgggaaaaggttgtccagttaatg
atgctagattgcaagcttgcagttcctttgttgatccaaaacaaggatttaataactcca
tctgaagttgttaaacaacttttgaatgcaattgataagtgtgattccagatatttcttg
catgcatacttgcatccactatttgaagcagatcctcattctggaaaagaatttcacgat
atgcaggtagagctttatgcagaatatgatccaaagatgcttcttccttttcttcgtagt
agtcaacattataccctggagaaggcatatgaaatttgtattggaagagatcttttaagg
gagcaagtgttcattcttggaagaatgggaaatgctaaacaagcccttgctgtaatcata
aataaacttggggatattgaagaggctgtagaatttgtaaatatgcaacatgatgatgaa
ctctgggaggagttaatccagcagtgtcttgataaacctgaaatggtgggcgtgttattg
gagcacacggttggaaacctagatcctctctatattgtgaatatggttcccaacggattg
gagattcctaggctcagggatcggctagtcaaaatcgtcaccaattacaggactgaaaca
tctttaaggcatgggtgcaatgatattctcaaggctgatattgtcaacctcttggtcaaa
tactacaaagaggcaacacatggaatttacttgagcaatgaagaagatgaggcacggtca
aagagaaatgatagtagggcttctcaggtgatcgaaaaatcggtaggtgtgagaagtatg
gaggttaagtcaaaacccaggggcggtgcaaggtgttgcatgtgtttcgatcctttttct
atacaaagtgttaatgtcattgttttcttttgctgtcatgcttatcacatgacttgtctt
atggattccacctatacgagtgaaatgaaagggagtgtggccactcctagtgagagagta
gacgattatgggtatgacgacagtgatgtggatgacaatggtgatgatgatacccaatcg
ggtggttcccgtatgcgttgtatcttatgtactactgctgctagtggagtgaagtga
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integrated database retrieval system
