Malus sylvestris (European crab apple): 126614830
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Entry
126614830 CDS
T09027
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126614830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126614830
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126614830
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126614830
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
ScoMcrA_N
Motif
Other DBs
NCBI-GeneID:
126614830
NCBI-ProteinID:
XP_050138458
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All DBs
Position
3:17011003..17012121
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AA seq
283 aa
AA seq
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MYGDQDPTTPIQKPIVIREVWAHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPPVDPT
SPYSRQTLRPSDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDV
ARDPHAPDSIELLRRQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFG
YLVKILTRRDLPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAV
GKCHQAGSDSLLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcgaccaagatccgacgactccgatccaaaaacccatcgtgatccgtgaagtc
tgggcccacaatctggaatccgaattcgagctcatccaaaacgtcatcgacgcctaccct
ttcatctccatggacaccgagtttcccggcgtcgtcttccggccccccgtcgaccctacc
agtccctactcccgccagaccctccggccctccgatcactacaggattctcaaatccaac
gtcgacgccctcagcctcatccaggtaggactcaccctctccgactcccgcggtaatctc
cccgacctcggctcccccacgcgcttcatctgggagttcaacttcaacgacttcgacgtc
gcgcgtgacccccacgctccagactccatcgaactcctccgccgccagggcatcgacttc
gaccgcaaccgctcccacggcgtcgactcctcgcgctttgcggagctgatgatgtcgtcg
ggactcgtctgcaacgactcggtgagttgggtcacgtttcacagcgcctacgacttcggg
tacctggtgaagattctcacgcgccgggacttgcccagtggcttgaacgaatttctgaaa
attctgagggtctttttcggaaatagggtttatgacgtcaagcacatgatgcgattttgc
aaaagcttgtacggcgggttggaccgggttgctagaaccttagaggtggaccgggcggtc
gggaagtgccaccaggccggttcagatagtttgttgacatggcatgcgttccagaagatg
agggacgtgtactttgtgcatggcgggcccgagcaacacgctggagtattgtatggattg
gaagtgttttaa
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