Malus sylvestris (European crab apple): 126614860
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Entry
126614860 CDS
T09027
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126614860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126614860
03036 Chromosome and associated proteins [BR:
msyl03036
]
126614860
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
126614860
Coactivators
SAGA/TFTC/STAGA complex
126614860
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
126614860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
Motif
Other DBs
NCBI-GeneID:
126614860
NCBI-ProteinID:
XP_050138493
LinkDB
All DBs
Position
3:16757934..16768765
Genome browser
AA seq
726 aa
AA seq
DB search
MLYKWNTDINHITKEKIRKKILQPSHTLVTMQVSVQKHTPRMLSSSVDATQLKDPHSLEV
HPRGANSHTDPSHIPPSTVQVQTDSRHPVENSARKFSEIESFSDSDGMQVSQMPPSCVVA
SDQERECSSVPTQVFNKPQQQQQQLHYSESSLSMHGNAGGTFHPYSGTRINTSALPVKQQ
PFDAQPRQSLQHQSMGSAQSGGQAHGMNIISMSKMGSQNSMNDPSRLEGGSCSHLNNNAT
LEQNPGPCKSSNKEQSSDPLSSMAYVKQGSFNQTIRQQHNPSLPDSQGLPSVSAALLEQG
NASSGIPMNEVLEKSSRLGASTSVSIAPSSSKSTLPTISVSPSLTMQVNPSVSDDLSTSL
MADVFSAWHSYQLGPRITSGTSPSGACKKTLPKKRSLGQNKPLETLGSSPSQSSKKQKVS
GTFVDIAELNDVTSVSGVNLEEEEELLFSGPKKHSKASEASRKFVQEEEERLILQKAPLQ
KKIGEIRLTHVSLIVVKCGLKSVRHDVERCLSMCVEERMRRLINTLILLSKQWVDAEKSR
HHTITTSDVRQQIIDLNRKPREERKKKRAEAEKLWKLNETNKKDNDKMRTAAAANVAALA
AVGGDDMFSKWKLMAQARKQRDGEIDVASRSQPVQGVNRTPTSTAGRIMESQEAEKKGVA
APVAAAATSRKAGSNQVTTTQTRMARSISVKDMIVVLEREPQMSKSTLLYRLHERIQSDT
AIASSN
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgctttataagtggaacacggatataaatcacatcacaaaagagaaaatccgcaagaaa
atcttgcaacctagtcatacactggttaccatgcaggtctcagtgcagaaacatactcca
aggatgctatctagtagtgtagatgccacacagttgaaggatcctcattcacttgaagtt
catccgagaggtgccaattctcacactgacccatcacacattcccccttcaacagttcag
gtgcagactgattcaaggcatccagttgaaaacagtgctagaaaattttcagagatagaa
tctttctcagattctgatggaatgcaagtcagtcaaatgccaccctcttgtgtggtagct
tcggatcaagaaagggagtgctcctcagttcctacgcaagtatttaacaagccacagcaa
cagcaacaacaattgcactattcagagtcatcacttagtatgcatggaaatgctggtggt
acttttcacccgtattcagggacaaggatcaatacttctgcattgcctgtcaaacagcaa
ccttttgatgcacaaccaaggcaaagtctacaacatcaaagcatgggttctgctcagtca
ggtgggcaagcacatggaatgaacatcattagtatgtccaaaatggggagtcaaaattct
atgaatgaccctagtagactggaaggtggatcttgttctcacttgaacaataatgctact
ttagaacagaatcccggtccttgtaaatcgtcaaataaagagcagagttccgatcccttg
tcatcaatggcatatgtcaaacagggatcgtttaatcagactattaggcagcaacacaac
ccctcattgcctgattcacagggattgccttctgtttctgctgcactacttgaacaggga
aatgcatcatctggaattccaatgaatgaagtcttagagaagtcttctagattaggcgct
tcaacatctgtaagcattgctccttcatcatctaaaagcacattgcccacaatttctgtt
tctccttccctcacgatgcaagtcaatcctagtgtctcggatgatctttccacttcatta
atggctgatgtcttttctgcttggcattcttaccagttaggccctcggataacatctgga
acctctccttctggggcttgtaagaaaacccttccaaaaaaacgttctcttggccaaaac
aagccactcgaaacacttggttcatcaccgtcgcaatcaagtaagaagcaaaaagtatct
gggacctttgttgatatagcagaactgaatgatgtcacttctgtcagtggagtcaatctc
gaggaagaggaagagctgctattttcagggcccaagaagcatagtaaagcttcagaagcc
tctcgaaaatttgtgcaagaagaagaggaaaggctgattttgcagaaggctccattgcag
aaaaagataggggaaatcagacttacacatgtgtctttgatagtggtcaaatgcggtttg
aaaagtgtacgacacgatgtagagcgatgcttgtcaatgtgtgttgaggaaaggatgagg
aggcttataaatactttgatcctactgtcaaagcagtgggttgatgctgaaaagtcaaga
caccacactattactacctctgatgttcggcaacaaattattgatctcaatcggaagcct
agagaagaacgtaaaaagaagcgggctgaggcagaaaagctctggaagcttaatgaaaca
aacaaaaaggacaatgacaaaatgaggacagcagcagcagcaaatgttgctgcccttgcg
gccgttgggggagatgacatgttctcaaaatggaaacttatggcacaagcacggaaacaa
cgtgatggtgagattgatgtagcatctagatcccagccagttcaaggtgtaaaccgcaca
cctacatctacagctggaagaattatggagagtcaagaagcagagaaaaagggtgttgct
gctcctgttgctgcagctgctacttccagaaaagccggaagtaaccaagttaccacgact
cagacaaggatggctcgtagtatatcagtcaaggatatgattgttgtcttggaaagggaa
cctcagatgtcaaagtccactctgctgtatcggttgcatgaaagaatccaatccgacact
gctatcgcttcgtcaaattga
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