Malus sylvestris (European crab apple): 126614976
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Entry
126614976 CDS
T09027
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126614976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126614976
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126614976
mRNA degradation factors
5'-3' decay
Decapping complex
126614976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
PEP5_VPS11_N
WD40_Prp19
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR75_2nd
Beta-prop_TEP1_C
Sey1_3HB
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
126614976
NCBI-ProteinID:
XP_050138644
LinkDB
All DBs
Position
3:3214850..3222850
Genome browser
AA seq
1413 aa
AA seq
DB search
MASTGPNPPPQQQPQPFDMQKFFKPTNPAALTAQTSTPANSNQNPNPNLSSSSFPVPPAS
FPPPTGPYSYPPQTAPFHHHQFQYLPQPQQPHPQIQYSPQDHHLLQQRSLSFPTPPLQPP
GNYNIATPTSNPSGTGSGNSNSSPNSGARIMALLGGPSGNLEPELPTPPGVSMPPTLPMG
IQPTGPIRMPSNKLPKGRHLVGNNVVYDVDVRLQGEVQPQLEVTPITKYGSDPQLVLGRQ
IAVNKSYICYGLKQGNIRVLNIHTALRSLFRAHTQRVTDMAFFAEDVHLLASVSVEGRLF
VWKISEGPDEEGTPQITGKVVIAIQIVGEGEAVHPRVCWHCHKQEVLVVGFGKRVLRIDT
TKVVKGEPPSADEPLKCPVEKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIKI
WEDRKAQPLLVLRPYDGQPVYSATFVTAPHRPDHIILITVGPLNREVKIWSSASEEGWLL
PSDAESWKCTQTLELKSSSEPRVEEAFFNQVIALSQAGLLLLANAKKNAIYAVHLEFGPD
PAATRMDYIAEFTVTMPILSFTGTSISPHGEQIVQVYCVQTLAIQQYALELSKCLPPPLD
SVGLEKSDSNISRDAIGAEVYALDLSGSKPTEVLLANSSRRPAVHESSSEGAAAMRYPVS
SNSVEAITSKDITTSSTESRPVSLASASSDSAVVFVASPSIPLSPRLSRKLSGIRSPADR
SEPGRTLNDHVGDQQVNDYSIDRQMITPRSNVSDVPAVDDDSRNDEPKVGQDDLSSVLNP
PIMFKHPTHLITPSEILMAASSSEGANTVDCKSEGEGNIPDVLVNSDVGNSEVEVKVVGE
TRSTQIDEFVCQGEPQNAVSENKEKYFCSQASDLGIEMARECCVIPAETYVTDEARQVDG
GSVTEPPGQSHAGDEDQDSAKDVSGSSTSPTVLQSQTSNTKVKKQKWKNSQASGSSLPSA
SMTNSIDSTNEHGGSSSLPSAEAAYPQIMAMQDTVNQLLTMQKEMQKQITMMVAAPVTKE
GRRLEAALGKSMEKALKANNDALWARFQEENAKNEKLLRDRNQQITSLINNLMNKDFPVM
LEKVVKKESSVIGPAVVRAITPAIEKAIPLAISDSFQRGVGDKAVNQLEKSVNSKLEATV
SRQIQAQFQTSGKQALQDALKSSMEASVVPAFEKSCKAMFEQVDATFQKGMVEHTTVAQQ
HFDSTHSPLALALREAMNSASSVTQTLSGEVAEGQRKLIALAAARGNSSAVNPLVTQLTN
GPLGGLHEKVEVPLDPKNELSRLVSERKYEEAFMAALQRSDVSIVSWLCHQVDLRGILLL
NPVPLSQGVLLSLLQQLACDISNDTPRKVAWMTDVAGATNPANQMIAMHGRPIFEQVYSI
LHHQHALPAINSAEHTSIRLLMHVINSIMMACK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaccgggccaaatccgccgccacagcagcaaccgcagcccttcgacatgcag
aagttctttaaacccacaaacccagctgctctcaccgcccaaacgtcaacccccgccaat
tcaaaccaaaaccctaaccctaatttgagttcctcctcgttcccagtcccgcccgcttct
ttccctcctccgacgggcccctactcgtacccgccccaaacggcaccgtttcaccaccat
cagtttcaatacctcccccaaccgcagcagccccacccccaaatccaatactctccgcag
gaccaccacttgctccagcagaggtctctctcgttccccaccccgcccctccaaccccct
ggtaattacaacattgccactcccacttccaaccccagcggcaccggcagtggtaattcc
aattcgagccccaattccggcgctcggatcatggcgcttcttggtggtccgtcaggaaat
ctagagcctgagttgccgactcctccaggtgtctcaatgccgcccactctcccaatgggg
attcaacccactggcccgattcgaatgcccagcaataagctaccgaaaggccggcatttg
gttggcaataacgtggtttatgatgtggacgttaggttgcagggtgaggttcagccacag
ctcgaagttacacccataaccaagtatggttcggatcctcagcttgtgcttggccgccaa
attgcggttaataagtcgtatatatgctatggattgaagcagggcaacattcgggtgttg
aatatacacactgcattgagatctttgtttcgagctcatacacagagggtcacagacatg
gctttctttgctgaggatgttcaccttttggctagtgtgagtgttgaaggaagactcttt
gtatggaaaatttcggaaggtccagatgaagaaggtacgccacaaatcactggaaaggtt
gtgattgctattcaaatagttggagagggggaagctgttcatccacgagtttgttggcac
tgtcataaacaagaggttttggtggttgggtttggaaagcgtgtactaagaattgatact
actaaagttgtgaagggtgaacccccttctgctgatgagcctctcaaatgtcctgttgaa
aagctgattgatggagtccagtttgtcggtaaacatgatggagaagtgaccgacttgtca
atgtgccaatggatgaccacccgtctggtttctgcttctatggatggaacaataaagatc
tgggaagatcgcaaagctcaacctcttttagtattgagaccctacgatgggcaacctgtt
tattcagctacatttgtgacagctccccacaggccagatcatattatacttatcacagtg
gggccactaaatcgggaagtgaagatctggtcctcggcgagtgaagaaggctggctgctt
cccagtgatgctgaatcatggaaatgtacccagacattagagttgaagagttcttctgaa
ccccgagtcgaggaggcattctttaatcaagtcatagcattgtcacaagctggccttctc
ttacttgcaaatgctaagaagaatgctatatatgctgtacacttagaatttggtcctgat
ccagcagcaacgcgcatggattacattgcagaatttaccgttaccatgcctattttaagt
tttactgggacaagtatatctcctcatggtgaacagattgttcaggtttattgtgtacag
actctggccattcagcagtatgctttggaattatcaaagtgcttgcctccaccactggat
agtgttggattagaaaagtcagattccaatatctcacgcgatgcaattggggctgaagta
tatgctttggatctatctggaagtaaacccacagaggtgttgctagccaattcatcacgt
agaccagccgtacatgaaagcagttctgagggtgcagctgccatgaggtatcctgtaagc
tctaattctgttgaggcaatcacttcaaaagatattaccacttcaagtacagaatcaaga
cctgtttcattggcatcggcatctagtgattctgctgttgtatttgttgcatcaccatct
attcccttgagtcctaggttgtccaggaaactttctggtataagaagtccagcagataga
tctgagccgggtcgcacacttaatgaccatgttggagaccaacaagtcaatgattactct
attgacaggcaaatgatcactcctcgttcaaacgtgtcagatgtgcctgcagtggatgat
gactcaaggaatgatgagcctaaagttggacaagatgatttatctagtgtgctcaatcct
cctatcatgttcaaacatccaacccatctaataactccctctgagattttaatggctgct
tcatcttctgaaggagctaatactgttgactgcaagagtgagggggagggaaatatccca
gatgttcttgttaacagtgatgtaggtaattctgaggtggaggttaaagtagtgggtgaa
actagatctactcaaattgatgagtttgtctgtcaaggagaaccacaaaatgctgtctca
gaaaataaggaaaaatacttttgctcccaggcatcagatcttggaattgaaatggcccga
gaatgctgtgtgataccagcagaaacttatgttacggatgaagctcggcaagttgatggt
ggcagtgtgacagaaccaccaggccaatcccatgctggagacgaagaccaggactctgca
aaagatgtttctgggtcatctacctccccaacagttttgcaatcgcagacatcaaataca
aaagtgaaaaaacagaagtggaaaaattctcaagcatcaggttcatcattaccatcagca
agtatgaccaattccatagattccaccaatgaacatggtgggagttcaagcctaccctct
gcagaagctgcatacccgcaaattatggccatgcaggatacggttaatcagctactgacc
atgcagaaagaaatgcaaaagcagataacaatgatggtcgcagcccccgttacaaaggaa
gggaggagattggaagctgctcttggtaaaagtatggagaaggctttaaaggccaataat
gatgctctatgggctcgttttcaagaagagaatgcaaagaatgagaagttattgcgagac
cgtaatcagcaaataaccagtttgataaataacttaatgaacaaggactttccagtcatg
ttggagaaagtggtgaagaaggaatcatctgtgattggaccagctgttgttcgtgctata
actccagctattgagaaggcaatacctttggctatttctgattccttccagagaggagtg
ggtgacaaggctgttaaccaattggagaaatctgttaactcaaaacttgaagctactgtt
tccaggcaaattcaggcgcagtttcaaacttctggcaaacaagctcttcaggatgctctt
aagtctagtatggaagcttcagtggtacctgcctttgagaagtcatgtaaggccatgttt
gagcaagtagatgctacgttccagaaaggaatggttgaacacacaactgtggcccagcag
cattttgactccacacattcgccattggcactggctctaagggaagctatgaattctgca
tcatcggtgactcaaaccttaagcggagaagtggctgagggtcaacgtaagctcatagct
cttgcagctgcacgaggaaactcaagcgcagtaaatcctctggtcacacaactcactaat
ggacctttgggtggtctccatgagaaggttgaggtacctttggatccaaagaatgagcta
tcaaggctggtatctgaacgcaagtacgaggaggctttcatggcagctctgcaaagaagt
gatgtttccatcgtatcgtggttatgccatcaggttgatctacgggggatattgctgttg
aatcctgttcctctgagccaaggtgtgcttctttctcttttgcaacagctggcctgtgat
atcagcaatgatacacccagaaaagttgcgtggatgacggatgtggcgggcgccacaaac
ccggctaaccaaatgattgcgatgcacggtcggcccatatttgagcaagtttatagcata
ctgcaccatcaacatgccttgcctgcgatcaacagtgccgaacacactagcatccgactt
ctcatgcatgtcatcaactccattatgatggcctgtaaatga
DBGET
integrated database retrieval system
