Malus sylvestris (European crab apple): 126615396
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Entry
126615396 CDS
T09027
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
KO
K12882
nuclear cap-binding protein subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126615396
09122 Translation
03013 Nucleocytoplasmic transport
126615396
03015 mRNA surveillance pathway
126615396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126615396
03041 Spliceosome [BR:
msyl03041
]
126615396
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
126615396
Spliceosome [BR:
msyl03041
]
Common components
Common spliceosomal components
Cap binding complex
126615396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like
MIF4G_like_2
MIF4G
Motif
Other DBs
NCBI-GeneID:
126615396
NCBI-ProteinID:
XP_050139171
LinkDB
All DBs
Position
3:22258636..22279455
Genome browser
AA seq
864 aa
AA seq
DB search
MSSWKSLLLRIGEKSPDYGTSSDVKEHIETCYGVLRRELEHSPDDVSQYLIQCAEQLPHK
SPLYGTVIGLLNLENEEFIRKVVKNTQTNFQDALDSGNCNKIRILMRFLTVMMCSKVIHP
SSLVVVFETLLSSAATTVDEEKGNPSWQSRADFYITCILSCLPWGGAELIEQVPEEIERV
MVGVEAYLSIRKRASDTGLSFFEDDDENAREPSDKDFLEDLWGRIQVLSSNGWKLDSVPR
PHLSFEAQLVAGKSHEFGPISCPDQPAMPSTMSNITYGKQKHDAEFIYPQRIRRLNIFPE
SKTEDVQPMDRFIVEEYLLDVLFYLNGCRKECASYMAGLPVPFRYEYLMAETIFSQLLML
PQPPFRTIYYTLVIIDLCKALPGAFPAVVAGAVRALFDKMADLDMECRTRLILWFSHHLS
NFQFIWPWEEWAHVLDLPKWAPQRVFVQEVLEREVRLSYWDKVKQSIEHAPGLEELLPPK
GAPNFKFSVQETSEDGLHALSSDLRNMVKARASAREMIVWIEESVFPVHGMEVTLNVVVQ
TLLDIGSKSFTHLITVLERYGQVIAKLCADQDKQVMLINEIDSYWRNNSQMTAIAIDRMM
GYRILSNLAIVRWVFLPANIEQFHISDRPWEILRNAVSKTYNRVCDLRKEISSFKKSVVS
AEEAAATVKAELVASESKLSLMDGEPVTGENPVWLKRLKSRAEKAKEEVVSVRESLEAKE
ALLSRSLDEFEALFFSMYKSFLNVLTERLPEASKCVTLQGLKGIHADSMAIDLEESSAMD
VDNENGIPKKSELSGGRTSNVYNVGEKEQWCLSTLGYLKAFSRQYASEIWPHMEKLDAEV
LTEDVHPLIRKSVYCGLRRETDGL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagcagttggaagagtcttcttcttcgaattggcgagaaatctcccgactatggcacc
tcctccgacgtcaaagaacacattgaaacttgctatggcgtgcttcgccgagaattggag
cactctcctgacgacgtttcgcaataccttatccagtgtgctgaacagttgcctcacaag
agtcctctatacgggacagtgattggcttgttaaatttggagaacgaggaatttattagg
aaagtagttaagaacactcaaactaatttccaggatgctttagattccggaaattgtaac
aagattcgtattttgatgaggttcctgactgttatgatgtgcagtaaagttatccatccc
agttctcttgtggttgtgtttgaaacattattatcatcagctgcaacaacagttgatgag
gagaaaggcaatccgtcctggcaatcgcgagctgacttttacataacatgcattttatct
tgtctcccctggggaggagcggaactcattgagcaagttcctgaggaaattgagagagtt
atggtcggagttgaagcttatttgagcataagaaaacgtgcttctgacactgggttgtcc
ttttttgaggatgatgatgagaatgcgagagaacctagcgataaggatttcttggaagat
ttgtggggccgaatacaagttttatctagcaatggatggaaacttgatagtgttccgaga
cctcacctatcatttgaagcacagctagttgctggaaagtctcatgagtttggacccatc
agctgtcctgaccaacctgctatgccttcaacaatgtctaatataacttatggtaaacaa
aagcatgatgcagagtttatctatccgcaaaggatacgaaggctgaatatatttcctgaa
agtaaaactgaggatgtgcaacccatggatcgcttcatcgtggaagagtatctactagat
gtgctattttacttaaatggctgtcgaaaggaatgtgcttcatatatggctggcctacct
gtgccctttagatatgagtatcttatggcagagacaattttctcccagttgcttatgcta
ccacaaccccctttcaggacaatatattacacgctagttattattgacctctgtaaggca
cttcctggagcctttcctgcagtagttgctggtgctgtacgagctctttttgacaaaatg
gctgatttagatatggaatgtcgaacacgactcatcctttggttttcacaccacttatca
aactttcagttcatctggccatgggaagagtgggctcatgtcttagaccttccaaaatgg
gccccacaacgtgtttttgttcaggaggttctggagagagaagtccgtttatcttactgg
gataaagtgaagcagagtattgagcatgcccctggtctagaagagttgcttcctcccaag
ggagcaccaaatttcaaatttagtgttcaagaaaccagtgaagatgggctacatgcactt
tcttctgacctcagaaacatggtgaaagctagggcatctgcccgtgaaatgatagtatgg
atagaggaaagtgtgtttcctgttcatgggatggaagttaccctcaatgtggttgtgcaa
actctcctcgatattggatctaaaagtttcactcatttgattactgtattggagagatat
ggccaagtcattgcaaaactatgtgctgaccaggataagcaggtcatgctgataaatgag
attgattcttactggaggaataattctcaaatgactgctattgcaatagataggatgatg
ggctaccgaattttgtctaatctggccattgtcagatgggtctttttaccagcaaacatt
gagcagtttcacatatcagatcgtccatgggagatactaagaaatgcagttagcaagaca
tataaccgtgtatgtgatctaaggaaggagatttcttctttcaaaaagagtgttgtatca
gctgaagaagctgcagcaacggtgaaagcagagttagtagcttctgaatcaaagctttca
ctcatggatggcgaacctgttactggggaaaatcctgtgtggctgaagcgtttgaaatca
cgtgctgaaaaggctaaggaggaggtcgtgtctgtacgtgaatctttagaggctaaggag
gctcttctatcccgatcccttgatgaatttgaggcattattcttctccatgtacaaaagc
ttccttaatgtgttaacggaacggctgccagaagcatccaaatgtgtcacattgcaagga
ttaaaggggattcatgcagattctatggcaattgaccttgaagaatcatccgcaatggat
gtagacaatgagaatggaatacctaagaaaagtgaactgagtggtgggaggacaagtaat
gtttataatgtaggtgaaaaagagcaatggtgtctttcaactttaggctatctcaaggcg
ttctcgaggcaatatgcttccgagatttggcctcacatggagaagttggatgctgaggtt
ctaaccgaagatgtgcatcctcttattcggaaatcagtttattgtggtcttcgtcgagaa
actgatgggttgtga
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