Malus sylvestris (European crab apple): 126615558
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Entry
126615558 CDS
T09027
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126615558
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
126615558
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
NBCH_WD40
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_Vps41
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
Beta-prop_IP5PC_F
Motif
Other DBs
NCBI-GeneID:
126615558
NCBI-ProteinID:
XP_050139359
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All DBs
Position
3:complement(32118085..32119902)
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AA seq
413 aa
AA seq
DB search
MSSSSHEIVLTSSPDGPIIAYDASSGTALAQFTGSRSPRRGLTIVGKPYIAASHVSPTTG
SGSIHLYNWCSSSALHNLQVPEPVAPLAAMSDGAYLFAGGLSGSVHTLSIPSGDVLKSLA
VHNKPVSCLGISDDESLLISGSDDGSIVVVPIFQLVAASGYVLYDNVEDLVLHRFSAHSD
SVTAVVSGVGLYTSQVISCSLDGTCKFWSLLPAALLLTVVFPCAIFAIALNPREPEFYAA
GSDGSVHKGLWRTGKRQLVMQGKDLITWSPKHDGGVVSVVMVNEGRNLLSASEDGSVWVW
QVDAGQVVMVLANEMGSISDLVAATGTNYSKGHDFSAGNSGYRNGSCEFGLTGKELSSMP
IKMLKMDEMLKVAAGDRSRAIDMLESAIGMYERLLELILKEAKKSSSNNKQRS
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcttcttcccatgaaattgtcctcaccagctcccctgacggcccgattatcgcc
tacgatgcttcctcgggcactgctctagcacagttcacaggcagcaggtccccgcgtcga
ggtctcaccattgttgggaagccttacattgctgcctcacacgtatctcccaccactggt
tctggttcaatccacctttacaactggtgttcttcatctgccttgcataacttgcaagtt
ccggaacccgttgcccccctcgccgccatgtctgacggggcgtacctctttgccggcggc
ctgtcagggagtgttcatacattgtccatcccgtctggggatgtgctcaagtcattggct
gtgcataacaaacccgtgtcctgcctcgggatcagcgacgacgagtcgctcctgatttct
ggcagtgatgatggaagcattgttgttgttcctatcttccagcttgtggcggcctcagga
tatgtattatacgataatgtggaagacctggtgttgcataggttttctgctcattcggat
tcggtgactgccgttgtttctggtgtgggattgtacacctcccaggttatttcgtgctca
ttggatggcacatgtaaattctggagcctcttgcccgcagcgctcctgcttacggttgtg
tttccgtgcgctattttcgctatcgcattaaacccaagagaacccgagttctatgctgca
ggatcagatggttcagtacacaaaggattatggagaactggaaagaggcagcttgtaatg
caaggcaaggacttgatcacctggagtccaaagcacgacgggggagttgtatctgtggtg
atggtgaacgagggaaggaatttgttatcggcttcggaagacgggagtgtctgggtttgg
caagttgatgcaggacaggtggttatggttctcgctaacgagatggggagcattagtgat
ctggtggcagccacgggcacaaactacagcaaagggcatgatttcagcgcgggcaacagc
ggttatcgaaatgggagttgcgaatttgggttaactggaaaagaactgtcgagtatgccg
ataaagatgttaaaaatggacgagatgttgaaggtggcagcaggggatagaagcagagcg
attgatatgctcgaatctgccatcggaatgtatgagaggctcttggaactcatcctcaag
gaagccaagaaaagtagcagcaacaacaaacaacggtcatga
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