Malus sylvestris (European crab apple): 126615853 Help Entry 126615853         CDS       T09027                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism msyl  Malus sylvestris (European crab apple) Pathway msyl03030   DNA replication msyl03410   Base excision repair msyl03420   Nucleotide excision repair msyl03430   Mismatch repair Brite KEGG Orthology (KO) [BR:msyl00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     126615853    03410 Base excision repair     126615853    03420 Nucleotide excision repair     126615853    03430 Mismatch repair     126615853  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:msyl03032]     126615853    03400 DNA repair and recombination proteins [BR:msyl03400]     126615853 Enzymes [BR:msyl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      126615853     6.5.1.6  DNA ligase (ATP or NAD+)      126615853     6.5.1.7  DNA ligase (ATP, ADP or GTP)      126615853 DNA replication proteins [BR:msyl03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     126615853  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      126615853 DNA repair and recombination proteins [BR:msyl03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      126615853    NER (nucleotide excision repair)     Other NER factors      126615853    MMR (mismatch excision repair)     Other MMR factors      126615853 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  126615853 NCBI-ProteinID:  XP_050139729 LinkDB All DBs Position 3:complement(12214045..12223377) Genome browser AA seq 796 aa AA seqDB search MLSRSLCSCHCLLLPSLRRLHSPISLFRPKPSSLPLISLLPQNPNLRAMSSRPSAFDALM SGARAAAAKKKPQPSPSKKRKALDSTDPIKKPQLLPTPESACATQDPESVEVKAPESKEI KEAQESSGNGGEVVPAGKKVCVAAGAKERTEELKSRMPLLKKKAGEFDPKLVANWGQGER VPFVFVCLVFDLIDKETGRIVITDIVCNMLRTVMYTTPEDLVPVIYLAANRIAPAHEGLE LGIGDASIVKALAEACGRTEAHVKKQYKELGDLGHVAKESRSSQSMMRKPDALTVTKVFS TFRLLAKESGKDSQEKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLTALGQA AVYTEKHSTPPSHIQSPLEEAAKIVKQVYSLLPDYDKIIPALLSGGVWKLPEICNFTLGV PVGPMLAKPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKY PDVVAAVSRLKKSSVTSFVLDCEIVAYDREKQKILPFQVLSTRARKNVSVSEIKVEVCIF AFDMLYLNGRPLIQEQLKVRRECLYDSFVEEAGFFQFATALTSNDIDEIQKFLDAAVSSS SEGLIIKTLTKDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAF LLACYDSNNEEFQSICKVGTGLTEAMLEERSASLRTKVIPKPKSYYRYHDTMNPDVWFEP SEVWEVKAADLTISPVHRAAVGIVDANKGISLRFPRLIRVREDKPPEQATSSEQVAELYN AQAINHSNNQNDNEDD NT seq 2391 nt NT seq  +upstreamnt  +downstreamnt atgctctcacgatcactctgttcatgccattgtctacttctcccctctctccgccgtctc cacagccccatctccctcttccgccctaaaccctcttctcttcctctcatttccctctta ccccaaaaccctaatcttcgcgccatgtcctcccgcccctccgccttcgacgccctcatg tccggtgcccgcgccgccgccgccaagaaaaagccccagccttctccctccaagaagcgc aaagccctagactccactgaccctatcaaaaaaccccaattgctgcctacgcccgaaagc gcctgcgcaacccaagacccagaatccgtggaagtcaaagctccggaatccaaggaaatt aaagaagctcaagaaagttctggcaatggcggtgaggtggttccggcagggaagaaagtg tgcgtggcggcgggtgctaaggagcggactgaggaattgaagagccgaatgccgctactg aagaagaaagccggggaatttgacccaaaattggtggcgaattggggccagggcgagagg gttccttttgtgtttgtttgtttagttttcgatttgattgacaaagagacgggtcggatt gtgatcacggatattgtttgtaacatgttgaggactgtaatgtacaccacgcctgaggat ttggtgcctgtgatttatcttgcggcgaataggattgctcctgcgcatgaaggtttggag cttggaattggggatgcttcgattgttaaggcccttgcagaggcttgtgggaggactgaa gcgcatgtgaagaagcaatacaaggagctgggagatcttggtcatgttgcaaaggaaagc cgttcttctcaatctatgatgcgcaagcctgatgcattaactgtcaccaaggtttttagt acatttcgtctactagctaaggaatctgggaaggatagtcaggagaagaaaaagaaccat atcaaggcacttcttgttgctgccactgactgtgaacctctatatctgatccgtttgctt cagacaaagttgcgaattggattggcagagcagactctattaactgcattgggacaagct gcagtgtatactgaaaaacattcgacaccaccttctcatattcagagtcctctagaagag gcagcaaagattgttaagcaagtgtactctctgcttcctgattacgataaaatcatccct gcccttttaagtggaggtgtatggaagcttccagagatatgcaactttactttgggcgtc ccagttgggcctatgctagcaaaaccaactaaaggggtatctgagattgtacagaagttt caggatacagaatacacgtgtgaatacaagtacgatggagaacgtgcccagatacatttc atggagaatggttctgttgagatatacagtcgaaatgctgaacgaaacactggaaagtat cctgatgtggttgctgcagtgtcgaggttaaagaagtcatctgtaacatcattcgttttg gattgtgaaattgttgcttatgaccgtgaaaaacaaaaaattctgcccttccaggtactc agcactagagcgcgtaaaaatgtgagcgtgagtgagatcaaggttgaagtctgcatattt gcttttgatatgttgtaccttaatggccgaccacttattcaggaacaactgaaagttcgt agagagtgtctgtatgactcttttgtggaagaagctgggttttttcagtttgccacagcc ttaacatcaaatgatattgatgaaatacaaaagtttcttgatgctgctgtcagttcgagt tctgagggtttaattattaaaacattgaccaaagatgctacttatgagccttcaaagcgg tcacttaactggctgaaattgaagaaagattacatggacagtattggggactcactagac ttggtacctattgctgctttccatggccggggaaaacgtacaggtgtctatggtgctttc ctcctcgcttgttatgatagcaataatgaagagtttcaaagcatttgtaaagtaggcact ggactcactgaagcaatgcttgaagaacgttctgccagtctccgtactaaagtgataccc aaacctaagtcatactataggtatcatgatacaatgaatccagatgtatggtttgaaccc tcagaggtttgggaggtgaaagctgcggacctgactattagccccgttcatcgtgctgca gttggcatagtggatgctaataagggtatttctctccggtttccacgtcttattcgagtt cgggaagacaaacctccggagcaagccacatcatctgagcaggtagccgagttgtataat gctcaagcgatcaaccattcaaacaatcaaaatgacaacgaagatgattag

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