Malus sylvestris (European crab apple): 126615936
Help
Entry
126615936 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126615936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126615936
03009 Ribosome biogenesis [BR:
msyl03009
]
126615936
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126615936
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126615936
Complex B
126615936
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126615936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126615936
NCBI-ProteinID:
XP_050139819
LinkDB
All DBs
Position
3:complement(4098915..4104632)
Genome browser
AA seq
573 aa
AA seq
DB search
MSYVPPHLRSSSRTTTTITTTTTAEASSRTLDDQSKLSYSSSNSHFNYDKSSSGGASFSS
FSHSNASSRWSSGALSQASRARPDSVVPQWKPSDRVLRMNPEMIEEVCLRLNLDVSVSSD
SAPAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALTGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSASLESFRTAIVVGG
TNISEQRSELRAGVDVVVATPGRFIDHLQQGNTSITRISFVVLDEADRMLDMGFEPQIRE
VMRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEK
TDQLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQTE
REAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMG
QSTSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAEKQARVASKSSI
VGPTSVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccgcacctgaggtcgagctcaagaaccaccacgacaatcaccacc
accaccactgccgaagcctcgtctcgaaccctagacgatcagagcaagctctcctactcc
tcctccaactctcacttcaactacgacaagtcgtcgtccggtggtgcttccttctccagc
ttctctcactccaatgcctcctctcgctggagctccggcgctctctcccaggccagcaga
gctcgcccggattccgtcgtccctcagtggaagccctccgaccgcgtcctccgcatgaat
cctgaaatgattgaagaggtttgtttgcggcttaatttggatgtttctgttagttccgac
tctgctcctgctccggcaccgatcgagtcttttacagatatgtgtttgcaccctagcatc
atgaaggatatcgacaatcacggatacaccacaccgacatccattcaggctcaagctatg
ccggttgctctcactgggagggacttattaggttgtgctgaaactggcagtggaaaaact
gctgcattcgccattcccatgatacagcattgcttggctcaacctcctgttcagcgcggt
gatggaccgctagctctggtattggctccgactagagagcttgcccaacaaattgaaaaa
gaggtcaaagcgtttagtgcatctctcgagtccttcagaactgcaattgtggtgggtgga
accaacatatctgagcagaggtctgagctacgagcaggagttgatgtagtggttgctact
cctggaagatttatagatcatttacaacaagggaacacttctatcactagaatttcgttt
gttgttttagatgaagctgatagaatgcttgacatgggatttgaaccacagataagagag
gtgatgcggaacctttctgaaaagcatcaaactttgctgtttagtgcaaccatgcctgaa
gagatcgaagaattagctcaggaatacttgactaaaccagtgcaagtgaaggtgggaaaa
gtgagtagccctacagcaaatgtgactcagactttggagaaggttcctgagagtgagaag
actgatcagctattggctttgctcgtagaagaggcatctcgggttgaaggaactggccat
ccctttcccttaacgattgtgtttgttgaaaggaagacgagatgtgacgaagttgctgaa
gctttggtagcacaagggttgcatgcagttgctcttcatggtggtcgtacacaaactgaa
agagaggctgctctacgtgattttagaaaaggcactaccagtattttggttgccactgat
gttgcgtctcgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttcca
aagagcatggaagattatgtacaccggattggaaggacgggaagagcaggatcaatggga
caatctacgtccttttacacagatcgtgatatgttcctcgtggcaaatataaagaaagcg
atatcagatgctggatctgggaatgctgtggctttcgcaactgggaagactgcaagaagg
aaagaaaaagaagcagcagctgctgaaaagcaagctagggttgcttccaaaagctcaata
gtaggaccaacatcagtaaacattgaggacaagtatcggttcatgtttgcggattcgaac
aataaaaaagaaggggcagcagatagtgcttgggacgattga
DBGET
integrated database retrieval system
