Malus sylvestris (European crab apple): 126616347
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Entry
126616347 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126616347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126616347
03009 Ribosome biogenesis [BR:
msyl03009
]
126616347
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126616347
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126616347
Complex B
126616347
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126616347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
126616347
NCBI-ProteinID:
XP_050140361
LinkDB
All DBs
Position
3:complement(2771179..2776183)
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AA seq
605 aa
AA seq
DB search
MAKRSDDSIYHGRPTKRSWLDAVDGGAVGGLRRSEPLAQHYGADAAGGISYTAGDVKQCR
RQRRKITAETQDLPSETQDLPSETDDLEREVTCFLDDLPSETQDLNTDVTSYTPQGSMPE
TQHLNTDDTSYTVEEYRQRRGITVEGRGDIPNPIRNFDDTRFPENVIQQFSKAGFARPTP
IQAQVWPMALEGRDLIGIAQPGSGKKLAYLMPAIVHINSQPKLSRGGDGPRVLILAPTLR
LGEEIQQEYAKFCAASNIKVLLSWKLSSPKKSRGGILIATPRSLLVALEDGYTNVRRVTY
LVLDGADWMLEKQNMGFGSQIQDIVSKIHPDCQILLLGTSWSKEVDKRANRFLYNACNVA
IVSPPLKPTHPIDQTVYVVTEDQKYNKLVELLGRIVDGSRILIFMDIKEGCEKRDQFALQ
LYRDGQHAVSLHENKGQAEMARIVSEFQAGRVPIMIATDVAARDLDLKDVKYVINYEFPV
SLDDYVYRIDRAGSAAAKGTVFTFFTTANAVFAEELIILLKEAGQKVSSELEQLGRDVPY
PGTYIPAPWRWAVNQEEIGAGHFFPLYLHCSKTKDIASNVVQEINRKKGLQLHFLSVVEA
YQHLS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcgctccgatgattccatttatcacggtcgtccgacaaaaagaagttggttg
gatgctgttgatggtggtgctgtgggcggacttcgtcgctccgaaccgttggcacagcat
tatggtgctgatgctgctggaggcatttcatatacggccggcgacgtcaagcagtgtagg
aggcagcggaggaaaattactgctgaaacgcaggacctcccttctgaaacgcaggacctc
ccgtctgaaacggacgacctcgagagggaagttacttgtttcttggacgacctcccgtct
gaaacgcaggacctcaatactgatgtcacctcttatacgcctcagggcagcatgcctgaa
acgcagcacctcaatactgatgatacctcttatacggtcgaggagtataggcaacggagg
ggaatcactgttgaaggccgtggtgatattccaaaccccatcaggaatttcgatgacact
cggtttccagaaaatgttatacaacaattttcaaaagctggatttgctaggcctacacca
attcaagctcaagtatggccaatggctttggagggccgtgacctcattggtattgctcaa
ccaggatccgggaagaagctggcgtatctgatgcctgcaattgtccatataaactcccag
ccaaaactatctcgtggtggagatggcccaagagtattgattttagctccaacgctgcga
ctcggtgaagaaatccaacaagagtatgctaaattttgtgcagcttccaacattaaagtc
ttattaagctggaaactgtcttctcctaaaaaaagtagaggtgggattctaatcgccaca
cctaggtccttgcttgttgcgttagaggatggttatactaacgtcagaagggtcacatat
cttgtgttggatggcgctgattggatgctagaaaaacaaaacatggggtttgggtctcaa
atacaagacattgtttctaagattcacccagactgtcaaatattattgttgggtactagc
tggtcaaaggaggttgataaacgggcaaaccggttcctttacaacgcatgcaatgttgca
attgtttctccacctctgaaacctacacatccgatcgaccaaactgtttacgtcgttact
gaagatcagaaatataacaaattggtagagttgctaggtcgtatagtggatggcagcaga
atactgatattcatggatataaaggaaggatgcgaaaaacgtgatcagtttgccctgcag
ctttatagggacggtcagcatgcagtctcgcttcatgaaaacaagggtcaagcggaaatg
gcccggattgtctctgagtttcaagctggcagggtccccataatgattgcaaccgatgtt
gctgctcgtgatctagatctgaaggatgtgaaatatgttatcaattacgagtttccagtg
tcccttgatgattatgtttaccgcattgaccgtgctggaagtgccgcagcaaaaggaaca
gtattcacgttctttacaactgctaatgctgtattcgcagaggaacttattatcttactc
aaggaagctggacagaaggttagttctgaattggaacaactggggcgtgatgtaccatat
ccaggaacctacatacctgcaccgtggcggtgggcggttaaccaggaggagattggagct
ggtcatttctttccgttgtatctgcattgttctaagaccaaggatattgccagtaacgtc
gtgcaagaaatcaaccgaaaaaagggcctccaactgcattttttgagcgtggtggaggca
taccaacacttgtcctga
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