Malus sylvestris (European crab apple): 126616369
Help
Entry
126616369 CDS
T09027
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
126616369
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126616369
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
126616369
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
Motif
Other DBs
NCBI-GeneID:
126616369
NCBI-ProteinID:
XP_050140381
LinkDB
All DBs
Position
3:complement(34997928..35001607)
Genome browser
AA seq
587 aa
AA seq
DB search
MREMQRMVNSFPEEVLEYVFSFIQTDQDRNSISTVCKSWYEIERWCRRRIFIGNCYAVSP
RMLIRRFPDVRSIELKGKPHFADFNLVPEGWGGYVYPWIAAMASAYPWLEEIKLKRMVVT
DETLELIAKSFKNMKLLVLSSCEGFSTDGLASIAANCRNLRELDLHESDVEDLSGHWLSH
FPDTYTSLVSLNIACLGSELSFSALERLVARCPNLRSLRLNRSVPLDRLANLLRLAPRLT
ELGTGAYSAELRPDVFAILSCAISGCKELKSLSGFWDVVPTYLPAIYSICPGLTSLNLSY
STIQSPDLVKLVSQCPNLQRLWVLDYIEDVGLDALAESCKDLRELRVFPSDPFVVEPNVS
LTEQGLISVSEGCPKLHSVLYFCRQMSNDALITIARNQPNFTCFRLCIIEPKIPDYLTLQ
PLDVGFGAIVENCKNLRRLSVSGLLTDQAFDYIGTYGKKLEMLSLAFAGDSDLGLHHILS
GCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQRLPRLNVEVI
DERGHPESRPESSPVEKLYIYRSVAGPRFDMPGFVWTMDEDSALRVT
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgcgggaaatgcagagaatggtgaactcgtttcccgaggaggttctggagtacgtgttc
tcgttcatacagactgaccaggaccggaactcgatctcgacggtgtgcaagtcgtggtac
gagatcgaacggtggtgcaggcggaggattttcatcgggaactgctacgccgtcagcccc
aggatgctgatcaggcggttcccggacgttagatccattgagctcaaaggaaagcctcac
ttcgccgactttaatctggtcccggaaggctggggtgggtacgtgtacccttggatcgcc
gccatggccagcgcctacccttggcttgaagagatcaagctcaagaggatggtcgtcacc
gacgagaccttggagctgattgccaagtccttcaagaatatgaagctcctcgtgctttcg
tcctgtgagggattcagtactgacggactcgcctccattgctgccaattgcaggaatcta
cgggagctggacttgcatgagagcgatgtggaggacctgagtgggcattggctgagccat
tttcctgatacatacacgtcacttgtgtcccttaacattgcttgcttggggtctgagttg
agtttctctgccctggagcgcctggtggctaggtgtcccaacctgaggagtctccggctc
aatcgttccgtgcctcttgacaggctagccaatctacttcgcctggcacctaggctgact
gagttaggcacaggggcctactcagctgagttgcggcctgatgtcttcgcaatcctatca
tgtgccatctcaggatgcaaggaactcaagagcctatctggattttgggatgtggtacca
acatatcttccagctatttattctatctgccctgggctaacatcactaaatttgagttat
tccacaattcaaagcccggatcttgtaaagcttgttagccaatgcccgaatctgcagcgc
ctctgggtattggattacattgaagatgttggccttgatgccctggcggaatcttgcaag
gatctacgagagttaagggtgtttccctcggatccatttgtggtggaaccaaatgtgtcc
ttgacagagcagggcctcatatctgtttctgagggctgtccaaagctccactcagttctg
tacttctgccggcaaatgtccaatgatgcattaatcaccattgctaggaaccagcctaac
tttacatgttttcgtctttgtataattgagcccaaaattcccgactacctgacccttcag
ccccttgatgtgggttttggggccattgttgagaactgcaagaatctccggcgattgtcc
gtttctggtctactaactgatcaagcatttgattatatcggaacctatggtaaaaagttg
gagatgctgtctttagcctttgccggagatagtgacttggggcttcatcatatattgtct
gggtgcgataatcttcggaaattggagatcagggattgtccttttggtgacaaggctctt
ttggccaatgctgcaaagctggagacaatgcgatccctttggatgtcttcatgctcagtg
agttatggagcatgtaagctacttggccagaggttgccgaggctaaatgttgaagttatt
gacgagagggggcacccagaatccaggccggagagctctcccgttgagaagctctacatc
tataggtccgttgcagggccaaggtttgacatgcctggttttgtttggaccatggatgaa
gattcggcattgagggttacttga
DBGET
integrated database retrieval system
