Malus sylvestris (European crab apple): 126616582
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Entry
126616582 CDS
T09027
Name
(RefSeq) BRCT domain-containing protein At4g02110-like isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
126616582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126616582
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126616582
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
126616582
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
126616582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
RTT107_BRCT_5
PHD
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
126616582
NCBI-ProteinID:
XP_050140611
LinkDB
All DBs
Position
3:complement(36572331..36577764)
Genome browser
AA seq
1241 aa
AA seq
DB search
MTEGSSPAKTFVGVRFLLLGFDPLDEHQVRSKLVDCGGEDAAHYSPNCTHVIVDKIVYDD
PVCVAARNDAKTLVTALWVHHSFDVGLPIDPTSIIYRPLRDLNGIPDAKRLIVCLTGYQR
QDRDDIMTMVGLMGAQFSKPLVANKVTHLVCYKFEGEKYELAKKIPKMKLVNHRWLEDCL
RDWQLLPEDNYNISGYELEMMEAEARDSEDEAENTFGKQSGVRSMYKSPHNIKAGSPATS
RLPKSEGEVRKVPLIFDNAIGNLSIPRNENKLDQTSSFSNSYVSKGLGCQDARELRDSSG
CDLNDQHHRTPDPKVRDDFISNCGSAGRASHSAGKLSYSRQTLCMPTVPTYTGDKSSGCS
VSSKVPICKSSATLKDQANDKFDPNCVEVPLKGIHLQNGEESSGILPRKRVMDLSYASSK
SQKMSPGAKSGSMHSPSPSNKSPKGKPTSLIDGSCRTTSHYIVTNDDHSPDKTSNLNAAG
NSMAGVSPAKLSNLFQKPLACDLPFSATVISNMGKDENANMKSPLTTIRRLRKPSLSNKP
GIVDCAEEKSTAAVSKAVELQNQPQDVEGSSASNKKSVNNSSNDPADLNMLKEGNNDLVT
KHLEQKVKSKRTLGSRPRLVSANQKGSVHLYKDASLNDTAVLYNAGDSQKSPDPTKLDVL
CPDVNVEAPNELEGKDVDMSADVDEKNIESMDDETEAPEEESEHKLENVVHEAKDIVVQA
TSKCNKKSEQEQHLQDHSDACTPRDAMASLGIEGNEREKSVSDNISLLVEPAADGDAVKG
KKNQGKKHALGKTKLKTVHPVADVMKPKKVVSEENTRNDNTRVTEKKKEKRLAGLVGKAK
CRSAPQNKLENSAKMKENKPIVGGDQTVSKAKQQAEKSIAKSGITPLKIIQTSAERSDNP
SIPEGKASSKVKIEPVRFILSGHRFQRKEFQKVIKRLKGRCCRDSHHWSYQATHFISPDR
VGRTEKFFAAAASGRWILKSDYLEASDKEGRFLEEEPYEWYKNGLSEDGTINLEAPRKWR
LLRKRTGHGAFHGMRVIIYGECIAPPLDTLKRVVKAGDGTILATSPPYTRFLKSGVDYAI
VSPGMPRADMWVQELLNHEIPCVVADYLVEYVCKPGYPLDRHVLYNTNAWAEKSFERVQS
RAEEVVEEAFTGEDGEDGEDASCGGGSDIPCVVCGSGERGEVMLICGNESGSVGCGIGTH
IECCNPPLESVPEDDWFCPDCSWSKNSTKSSKKRKKGRSSK
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgacggagggaagttcaccggccaagacgtttgtaggcgtccgtttccttcttttggga
ttcgacccccttgacgagcaccaggttcgatctaagcttgtagattgcggcggagaggat
gctgcccactattcccccaattgcacccacgtcattgtggataaaattgtgtatgatgat
cccgtatgtgttgctgctcgaaatgacgccaagactcttgtcaccgctttatgggttcat
catagttttgatgtcggactccccattgatcccacttcgattatatacagacctcttaga
gatttgaatggtattccggatgccaagagactaattgtatgcttgactggatatcaacga
caagatagagatgacattatgacaatggttgggttaatgggtgctcagttttctaagccc
ttggtggcaaacaaagtcactcatctcgtatgctacaaatttgagggggagaagtacgaa
cttgccaagaaaatcccaaagatgaagcttgtcaaccatcgttggttggaagattgctta
agggattggcaacttcttccagaagataattacaacattagtggctatgaactggagatg
atggaggctgaggctagagattcagaagatgaggctgaaaacacatttgggaagcaatct
ggggtgagaagcatgtataagagtcctcacaatataaaagctggctcaccagcaacgtct
agattgcctaaatcagaaggagaggtgcgaaaggttcccttgatttttgataatgccatt
ggcaacttatcaattcctcggaatgagaataaattggatcaaacctcaagcttttctaat
tcttatgtttccaagggattaggctgtcaggatgcacgtgagttgagggattctagtggc
tgtgacctaaatgatcaacatcaccgaacccctgaccctaaggtgagagatgatttcatc
tctaattgtggttctgctggaagagcttcgcactctgctgggaaattaagctactcaagg
caaaccttatgcatgccaacagttccaacatacacgggcgataaatcaagcggttgtagt
gtgtcttctaaagtacctatttgcaaatcaagtgccactttgaaagatcaagcaaatgac
aaatttgaccccaattgtgttgaagtccctttaaaaggaattcatttacagaatggagaa
gagtcaagtggtatattgcctcggaaaagggtgatggatctctcttatgctagctccaaa
tcacagaagatgagtccaggtgcaaaatcaggcagtatgcatagtccttcaccaagtaat
aaatctccgaaaggaaagcctacatctttgattgatggttcatgcaggactactagccat
tatattgtcacaaatgatgaccactctccggataagactagcaatttgaatgctgcagga
aactcaatggctggtgtttcaccagccaaattatctaatttatttcagaagccattggca
tgtgatctccctttctctgccactgtgatctcaaacatggggaaagatgaaaatgcaaac
atgaaatcacctctaaccactattcgaagattaagaaagcctagcttatccaacaagcct
ggtattgtagattgtgctgaggaaaagtctacagctgcagtcagcaaagcagtggaactg
caaaatcagccacaagatgttgagggttcatctgcaagtaacaaaaagtcagtgaataac
agttccaacgaccctgctgatctgaacatgcttaaagagggaaataatgacttagtaaca
aaacatcttgagcagaaggtgaagtccaagaggactctgggttctaggcctaggttagtt
tctgctaaccaaaaggggtctgtgcacttatataaagatgcctccttaaatgatacggca
gttctttataatgcaggggattctcagaaatctcctgatcccacaaagcttgatgtgctt
tgtccagatgttaatgttgaggccccaaacgagctggagggaaaagatgttgacatgtct
gcagatgttgatgagaaaaacattgaatctatggatgatgaaactgaagctccagaggaa
gaaagtgaacataaattagagaatgtagttcacgaagccaaggatatagtggtccaagca
acaagtaaatgtaataagaagtcagaacaggagcagcacctacaggatcattctgatgcc
tgtactccccgtgatgcaatggcctcattgggtatagaaggaaacgaacgagaaaagtca
gtttctgacaacatttctctgctggttgagccagccgcagacggagacgctgtcaaggga
aagaagaaccaagggaaaaagcatgctttgggtaaaaccaagctgaaaactgttcaccct
gtcgcggatgttatgaaacctaaaaaagtagtatctgaggaaaatactcggaatgataac
actagggtgacagagaagaaaaaagaaaaaagacttgcaggtctagtgggcaaagctaag
tgccgcagtgcgccccaaaataagttagagaactctgccaaaatgaaggagaacaagcca
attgttggtggagatcaaactgtaagcaaggccaaacagcaggcagaaaaatcaatagct
aaatctggtataactccgttgaagataattcaaacatctgcggagagaagtgacaatcct
tcaatacccgaagggaaggcttcaagcaaagttaaaattgaacctgttaggtttattctg
agtgggcaccgatttcaaagaaaggagtttcaaaaagttatcaagcgtttgaaaggaaga
tgttgccgggattctcatcactggtcttaccaggcaacacacttcatctctccagatcga
gttggcaggacagagaaatttttcgcagctgcagcgtctggaaggtggattcttaagagt
gattatctggaagctagtgataaggaaggaaggtttttggaagaagaaccttatgaatgg
tacaagaatggtcttagtgaagatggtacaatcaatttggaggccccaaggaagtggcgg
ctcttgagaaagagaacaggccatggtgctttccatggaatgcgcgttatcatatatggc
gaatgtattgcaccacctttggatactctgaagcgtgtcgtgaaggctggtgatggaaca
atattggcgacttctcctccttatacccgcttccttaagtcgggggttgactatgccatt
gtcagcccaggcatgccgcgtgccgatatgtgggtacaagagttgttgaaccatgagata
ccctgcgtagtggccgattacttggttgagtacgtgtgcaaacctgggtacccgctcgac
agacacgtgctatacaacaccaatgcgtgggcggaaaagtcttttgagagggtgcagagc
agagcggaagaggtggtggaggaagcgtttacaggtgaggatggtgaggatggtgaggat
gctagttgtggtggtggtagtgacataccttgcgtggtgtgtgggtctggggagagaggg
gaggtgatgctgatatgcggcaacgaaagtgggagcgttgggtgtggaattggtactcat
atcgagtgctgcaatccaccacttgaaagtgttccggaggatgactggttttgtccagac
tgtagctggagcaaaaacagcaccaagtcgtccaagaaaaggaaaaagggtaggagcagc
aaatga
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