Malus sylvestris (European crab apple): 126616599
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Entry
126616599 CDS
T09027
Name
(RefSeq) E3 ubiquitin-protein ligase SIRP1-like
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126616599
04121 Ubiquitin system [BR:
msyl04121
]
126616599
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126616599
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
126616599
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126616599
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
Zf_IFT144_1st
zf-ANAPC11
zf-RING_UBOX
zf-C3HC4_3
zf-RING_10
HypA
zf-HC5HC2H
zf-HC5HC2H_2
Fer2_2
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
126616599
NCBI-ProteinID:
XP_050140630
LinkDB
All DBs
Position
3:136386..138970
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AA seq
378 aa
AA seq
DB search
MDEAMAARYWCHRCSRMVDPIMEVEMKCPFCQSGFIEEMNGTTRENQDADSDLGSDRALS
LWAPILLGMMNNPHRRRRLRRFDFDDDDDDDNDNDNDDGDTRQGGDTELDRELESIIRRR
RRSSATILQLLQGIRAGLASESENSEGDRERDRERERERERVILINPFSQTIIVQGSYDS
NQGQNNNHTPIGSLGDYYIGPGLDLLLQHLAENDPNRYGTPPAQKEAVEALPTVTIKENL
QCSVCLDDFEVGIEAKEMPCKHKFHSGCILPWLELHSSCPVCRFQLPADESKRDSDISRN
SSNSRESEEIGDDVGGEEGDGDGRNGNGRRFSIPWPFNGLFSHSGSQSGGSVGNSSSSSS
SSSANATGSGSTSQTEEN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagcaatggcagcaaggtattggtgtcataggtgttctcgaatggtggatccc
atcatggaagtagaaatgaaatgccccttttgccaaagcggatttattgaggaaatgaat
ggcactacaagggagaatcaagacgctgactctgatttgggttccgatcgtgccctctcc
ctctgggccccaatcctgttgggcatgatgaacaatccccatcgtcgccggagattaaga
cgattcgactttgatgacgatgatgatgatgacaatgacaatgacaatgatgatggtgac
actcgccagggcggagatactgaattggacagagaacttgaatcaatcatccggaggagg
aggagaagctcagccactattctacagctgcttcaaggcattcgagctggattggcatct
gagtctgagaattctgagggggatagggagagggatagggaaagagaaagggagagggag
cgcgtaattcttataaatcctttcagtcaaaccatcattgttcagggatcttacgattcg
aatcagggtcaaaacaacaatcacacccctattggttcattgggcgattattacatcggg
cctggtttagatttgttgctgcaacatttggcagagaatgatcctaatagatatgggact
ccaccagcgcaaaaggaggcagtggaagctctacccactgtgacaatcaaggagaatttg
cagtgttcagtgtgcttggatgattttgaggtcggtatagaagcaaaagagatgccatgt
aagcacaagtttcatagcgggtgtattctgccatggctggagcttcatagttcctgtcca
gtttgcaggttccagttgcctgctgatgaatcaaagcgtgattcagatatttccaggaac
agcagtaactcgagggagagtgaagagattggtgatgatgttggtggggaagagggagat
ggggatgggagaaacggaaacgggagaaggttttcaatcccgtggcctttcaatggtctg
ttttctcactcaggatctcagtcaggtggcagtgtgggcaattcatcatcatcatcatca
tcatcatcggcaaatgcaaccggaagtggaagcacttctcaaacagaagagaattga
DBGET
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