Malus sylvestris (European crab apple): 126616821
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Entry
126616821 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126616821 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126616821
03015 mRNA surveillance pathway
126616821
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126616821
03041 Spliceosome [BR:
msyl03041
]
126616821
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126616821
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
126616821
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
126616821
NCBI-ProteinID:
XP_050140905
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All DBs
Position
3:complement(7217015..7221721)
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AA seq
830 aa
AA seq
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MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMSKVSMDVMRPWIANRATELL
GFEDEVLINFIYGLLEGKVNGKEIQISLTGFMEKNTVKFMKELWTLLISAQNNASGVPQQ
FLDAKQEEARKKKEEADRFANEIQKKKEKERIDQQEMLKMEGGAGKKANNAALEPNTKHM
SPRDSNDRYEDERGAEKRNGVKARNKVSRSPNSENSSLSPRERHRSRSISKSPKASRRSI
SSESDRSPPRRPITTVRRHSPEGSISPRRRSPYSRQRSRSNSQQRSPSPYRRRVRSPYWR
RPSLVRHRRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPVRRRRSPSPVR
RRRSPSPVRRPRSPSPVRRRRSPSPLRRCRSRSPVRRRSPSPVRQSYRRSPLNTRDRYVS
PLQHRSPVRSRRSPTPPHRSPSPHDQSSSPIQHDSPSPIRRTSKLQRSPSQSPQERTRSL
EKTSSVPHRSSSHGSLQRELKNGNDSRKRETDFLPSPERSRILSESPPGVRSSSEERRRS
LSSPDESPVRRPREQMTRNVSSSPPRKLREQQLRRGSPDTSEDKPKVSPAKVRNKEEYSK
NRLGNKDSRNKEQEMKSGKSSGRGVPESPDQQQSPTIYKDSLHGETQNPDDGRKSDEKNR
SHSKNSKDSDRHRKPGSVHSSVEKVDHGNRSGTVESGSEESEKHRGGDKGKRKNKRSERQ
EVTSEDDYSNDSEIDERKDAKRRRKEEKRSRKEKKRRRREERRHRKEERRAEKLKGKNYS
GASASDCEHVGRRELHSSDNEETEAIQKKLEIELRKKALESLKAKKGISH
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtctggtgggttcttcaggggtacgtccgccgatcaggacactaggttttccaataag
caagccaagctactgaaatctcagaaatttgcacctgaattggaacatttggtcgatatg
tcgaaggtgagtatggatgttatgcgcccgtggattgctaatcgggcaacggagcttctt
gggtttgaagatgaagttcttatcaactttatttatggtcttttggaaggaaaggtgaat
gggaaggaaattcaaatatcgcttaccggatttatggagaaaaatactgtgaagtttatg
aaagagctttggacgctgcttatcagtgcgcaaaacaatgctagcggtgtacctcaacaa
tttttggatgccaaacaagaagaagcacggaaaaagaaggaggaggcagacaggtttgca
aacgaaattcagaaaaagaaagagaaggagaggatagatcaacaagagatgttgaagatg
gaaggaggggctggtaagaaagctaacaatgctgcattggagccaaacacaaagcatatg
tcaccaagggattcaaatgatcgttatgaggatgaaagaggagctgaaaagaggaatggt
gtgaaggcaaggaacaaggtttccagatctccaaattcagaaaattcatctttgtctcct
cgtgaaagacaccgatcacgaagtatttccaagtcgccaaaagcatcgagacgatccatt
tcttctgaaagtgatcgctctccaccaagacggcctattacaactgttcggaggcattca
cctgagggttcaatctccccaagaagaagatcaccttattccaggcaaagatctagatca
aattcccaacaaagatcaccctctccgtatcggcgtagagtacgttctccatattggcgt
agaccctcacttgtcaggcaccgcagatcaccctcacctgtccggcgccgcagatcaccc
tcccctgtgcggcgccgcagatcaccctcccctgtccggcgtcgcagatcaccctcccct
gtccgacgccgcagatcaccctcccctgtccggcgccgcagatcaccctcccctgtccgg
cgccgcagatcaccctcgcctgtccggcgtcccagatcaccctcacctgtgcggcgtcgc
aggtcgccctctcctttgcgacgttgcagatctcgctcacctgtgcgtcgcagatcaccc
tcacctgtacgacagtcgtatcgaagatccccattgaatacacgggatcggtatgtgtct
cccttgcagcataggtcaccagttcgtagcaggaggtcaccaactcctccgcataggtct
ccgtctccacatgatcaaagttcatctcctattcagcatgattccccttcgccaatcagg
agaacatcaaagcttcaaagatctccctcacaatctcctcaagaaagaaccaggtccctt
gaaaaaacttcttccgtgccacaccggtctagctcgcatgggtcattgcagagggaatta
aagaatgggaatgattcgcgtaaaagagaaacagatttcttgccatcaccagagaggtct
cgcatactctcagaatctccaccaggcgtaagaagttctagtgaagaaaggagaagaagt
ttgtctagcccagatgagagtccagttagacgaccaagggagcaaatgacacgtaatgtt
agctcaagtcctccaaggaaactaagagaacaacaacttcgtcgtggaagtccagacaca
agtgaagataagccgaaagtttctcctgctaaggttcgtaacaaggaagagtactctaag
aatcgcctgggtaataaggactccagaaacaaagagcaggagatgaagagtgggaaatct
tctgggaggggggttcctgaaagtcctgatcaacaacagtctccgaccatatataaggac
tctctacatggtgagacgcaaaatcccgatgatggtagaaagtctgatgaaaagaaccgc
tctcattcaaaaaattccaaggacagtgataggcatcgtaaacctggatctgtgcattca
tcagttgaaaaggttgatcatggtaatcgaagtggtactgttgaatctggttccgaggaa
agtgaaaaacacagaggtggggataagggaaaaagaaagaataagagatcagagaggcaa
gaagttacttcagaggacgattacagcaatgattctgaaatagacgagaggaaggatgct
aaaaggagaaggaaagaggaaaagagatcaaggaaggagaagaagcgccgaagacgcgag
gagagacgtcacagaaaagaagaacgtcgtgcagagaagctgaaagggaagaattacagt
ggtgcttctgcttcagattgtgaacatgtaggcaggagggagcttcattcaagtgacaat
gaagagacggaggctattcagaagaaacttgagattgagttacgaaagaaggctctcgaa
tcacttaaagcaaaaaagggcattagtcattaa
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