Malus sylvestris (European crab apple): 126617251
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Entry
126617251 CDS
T09027
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126617251
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126617251
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126617251
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126617251
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
126617251
NCBI-ProteinID:
XP_050141226
LinkDB
All DBs
Position
3:complement(9100621..9108480)
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AA seq
665 aa
AA seq
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MSGLLNSSLNGSASNIPDNSGRFASSFSGQSGAASPVFHHSGSIQGLHNIHGSFSVPNMP
GTLTSRSSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSGITNRGGIS
VVGNPGFSSSTNGIGGSIPGILPTSAAIGNRNAVSGLGVSPILGNAGPRITSSMGNMVGG
GNIGRSISSGGGLSVPGLVSRLNLSANSGSGSLTVQGQNRLMSGVLPQGSPQVISMLGNS
YPNPGGPLSQSHVQVNNLNSMGIMNDVNSNDSSPFDINDFPSLTSRPSSAGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKAGGNAEYGIDMHQKEQLHDNAVSMMQSQH
FSMGRSSGFNLGGAYSSHRPQQQQQHAPSVSSSGVSFSQVNNQDFLHMHGSDIFPSSHST
YHSQTSGGPPGIGLRPLNSANSVSGMGSYDQLIQQYQQQNQSQFRLQQMSAGNQSFRDQG
MKSMQSAQSAPDLFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPW
SDEPAKGDPEFGVPQCYYTKQPPVLHQGYFSKFSVETLFYIFYSMPKDEAQLYAAYELNN
RGWFYHKEHRLWFIRVPNMEPLVKTNAYEKGSYHCFDPNTFETIRKDNFVVHYELLEKRP
TLPQH
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtttacttaattcttctctaaacggatcagcctcaaatattccagacaatagt
gggcgatttgcgtcatctttctctggtcaatctggtgcagcttctcctgtttttcatcac
tcaggaagtattcagggattgcataacattcatgggagcttcagtgttcccaatatgcca
ggtactttaacatcaagaagttcaacattaaataatgttccttccggtggagtacaacaa
ccaactggaagcctctctggcggacgattcacatcaaataaccttcctgttgctttgtct
cagttatctcatggaagctcccatggacattcaggaatcactaatagaggaggtataagt
gtagtaggaaaccctggatttagtagtagcacaaatggaattggcggttctattcctggg
attctccctacatctgctgcaattggtaaccggaatgctgtttcagggttgggcgtgtcc
ccaattttgggaaatgctggtcctcggattacaagttccatgggaaacatggttggtggg
ggcaacattgggaggagtattagctctggtggaggtttgtcagtgcctggtcttgtttct
cgtctaaatttaagtgcaaatagtggatctggaagcttaactgtccaagggcaaaatcgc
ttgatgagtggtgtgctaccacaaggttctccgcaagtaatttcgatgcttggaaattct
tatcctaatcctggaggtccactttctcaaagccatgtccaagtgaataacttgaactct
atgggaataatgaatgatgtgaattctaatgacagttctccttttgacatcaatgatttc
ccttcattaacaagtcgtcctagttctgcgggagggccccaggggcaattgggttcacta
cgaaaacaaggccttggcgttagtcctattgttcaacagaaccaagagttcagcatccaa
aatgaggactttccagctttaccaggatttaaagcaggtggtaatgctgaatatgggatt
gatatgcaccagaaagaacaactccatgacaatgctgtgtcaatgatgcaatctcagcac
ttctcaatgggaaggtcctcaggatttaacttggggggtgcttattcttctcataggcca
caacaacagcaacaacatgctccatcagtcagcagtagtggtgtctcgttttcacaagta
aacaatcaggattttctccatatgcatggttcagacatattcccatcatcacattcaaca
tatcattcacagactagtggaggacctcctggcattggattaagacctctgaattctgcc
aattcagtttctggtatgggttcatatgaccagcttattcagcagtatcaacaacaaaat
caatcccagtttcgcctgcaacagatgtcagctggaaatcaatcatttagggatcaggga
atgaaatcaatgcagtcagcgcaatccgctccagacctatttggtttgcttggattgtta
agtgtcataaggatgagcgatcctgatcttacatcgcttgcacttggaattgatttgaca
acactgggattaaacttgaattcaacagaaaatcttcacaagacttttggttccccgtgg
tctgacgagccagctaagggtgatccagagtttggtgttcctcaatgttactatactaaa
caaccgcctgtactacatcaagggtatttttcaaagttttctgtggaaacgttgttctat
atcttttacagcatgcccaaagacgaagcccaattatatgctgcctatgaacttaataat
agaggctggttttatcacaaggagcaccgtctatggttcataagggtaccgaacatggag
ccacttgtgaagaccaacgcgtacgagaaaggatcttatcactgctttgatcccaataca
tttgaaacaatccgaaaggataattttgtggtgcattatgagttgttggagaagagaccg
acgttaccacagcattga
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