Malus sylvestris (European crab apple): 126617330
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Entry
126617330 CDS
T09027
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126617330
09124 Replication and repair
03420 Nucleotide excision repair
126617330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126617330
03036 Chromosome and associated proteins [BR:
msyl03036
]
126617330
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126617330
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126617330
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
126617330
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
126617330
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
126617330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
NAMPT_N
SNF2-rel_dom
AAA_11
AAA_19
Motif
Other DBs
NCBI-GeneID:
126617330
NCBI-ProteinID:
XP_050141320
LinkDB
All DBs
Position
3:34233968..34238767
Genome browser
AA seq
759 aa
AA seq
DB search
MKFQVEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPQNPVKLIYCTRTVHEMEKTLAELKLLHNYQVKHLGPQAQILAVGLSSRKNLCVNPT
VLAAENRDSVDAACRKLTASWVRNLAAENPNVPTCEFFEEYERAGSGAVLPPGVYTLQDL
RAYGKQKGWCPYFLARHMVQFSNVVVYSYQYMLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTIEGARRNLSKMQHDIERFKATDADRLRKEYNRLVEGLAQGGNLPI
TDTWLQNPALPDYILKEAVPGNIRKADHFVHVLRRLVNHLEGRLETENVEKEGPVSFVAT
ISTQAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKYDMRSDLGVVRNYGRLLLEMVSVVPDGVVCFFV
SYSYMDMIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFLSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKVGGGSGKKTLLSQEDLEKMGESIANDLLR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagttccaggtcgaagacgtgacggtctacttcccgtacgaccacatatacccggag
caatacgcctacatgctcgagctcaagcgcgccctcgacgccaagggccactgcctcctc
gagatgcccaccggcaccggcaaaaccatcgccctcctctctctcatcacctcctacact
ctgtccaagccccaaaaccccgtcaagctaatctactgcacccgcacggttcacgagatg
gagaagacgctcgccgagctcaagctcctccacaattaccaggtcaagcatctgggtccg
caggcccagatcttggcggtggggctttcgtcgaggaagaatctgtgtgttaatccgacg
gtgttggcggcggagaatcgggattccgtggatgcggcgtgccggaaattgactgccagc
tgggtcaggaacttggcggcggaaaacccaaatgtgccgacttgtgagttttttgaggag
tatgagagagctgggtctggagctgttttgcctcctggggtttatacattgcaggatttg
agggcgtatgggaagcagaaagggtggtgcccctacttcttggcgaggcatatggtgcag
ttttcgaatgtggtggtttatagttatcagtacatgcttgatccaaaagtggctgggatt
atttccaaggaaatgcaaaaggagtctgttgtggtgtttgatgaggctcataacatcgat
aatgtgtgtatcgaagcgcttagtgttagcgtgaggaggcagacaattgagggtgccagg
aggaatctcagtaagatgcagcatgacattgaaaggttcaaggccaccgatgcagataga
ttgcgtaaagaatacaaccggctagttgagggtttggcacaaggaggaaacctacctatc
acagatacttggcttcaaaatcctgctctacctgattatattttgaaggaggctgtgcct
ggaaatattcgtaaagcagaccattttgtgcatgtgttacgaagattggtcaatcatctg
gaaggccgtctcgaaactgagaatgttgagaaggaaggccctgttagttttgttgccact
atcagtacacaagctggaattgaccagaaaactctgaagttttgttatgatcgcctacac
tcattaatgatgacgttagaaattactgacaccgatgaattcttacacattcaaacgatt
tgcgactttgcgacacttgtggggacatacactcgtggattctctattataattgaacca
tttgatgagagaatgccgcacattcctgatcctgttttacagctttgctgtcatgatgct
tcacttgccataaagcctgtatttgatcgatttcaatcagttgtgattacatctggaacc
ttgagcccgattgatctctacccccgtcttcttaatttccatcctgtcgtcagtcgaagt
tttactatgtcattaacaagagattgcatatgcccaatggttctcacccgtggaagtgat
cagcttccagtaagtaccaaatatgatatgagaagtgatcttggcgtagtaaggaactat
gggaggttgctgctggagatggtttctgttgttccagatggggttgtatgtttttttgtc
agttactcttatatggatatgatagtcaatagctggaatgaaaatggaattttgaaggaa
ataatgcagcataagcttgttttcattgagacccaagatgtggtagagactactttggct
cttgacaattatcgtaaggcttgtgattgtgggaggggtgctgtcttcttgtctgttgcc
agaggaaaagtagctgaaggaatagactttgatcgacattatggacgattggtgatcatg
tttggcattcctttccagtacacattaagcaagattttgcttgcgcggctggaatacttg
cgggatacctttcaaataaaggaaggagactttttgacgtttgatgccttgagacaagca
gctcaatgcgtaggccgagtcatccggtcaaaagcggactatggcatgatgatttttgct
gacaaaagatatagccgtcatgacaagcgatccaaattgcctggatggatactgtcgcat
ttacgtgatgcacatctgaacttgagcacggacatggctctgcatatagcacgagagttc
cttaggaagatggctcaaccatatgataaggttggtggcggcagcggtaagaaaaccctt
ttatcccaagaagacttagagaagatgggcgaaagcattgctaatgatttgctgcgttaa
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integrated database retrieval system
