Malus sylvestris (European crab apple): 126617407
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Entry
126617407 CDS
T09027
Name
(RefSeq) DNA-directed RNA polymerase III subunit 1 isoform X1
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126617407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126617407
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126617407
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
126617407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
126617407
NCBI-ProteinID:
XP_050141425
LinkDB
All DBs
Position
3:9331497..9347089
Genome browser
AA seq
1419 aa
AA seq
DB search
MNRGQAKTIIFTKQPFIEDEGHLRIEKWKFSAMSDKEIRKMAEVQIFKGQYYDSNRKPIE
GGLLDPRLGPANRSSGACATCGGTTKDCPGHFGYLVLALPVFNVGYLSTIVDILKCICKL
CSGILLEEGMRIEFLKKMRRPKMEPMKKSELMKVIVKKCNSLTTNNRPVKCSKCGFINGS
VKKAVGVLGIIHDRSKFIGVMDDFRSAISHTKESKASFNPATHNLNPARVFSLFKRMVDE
DCELLYLSDRPENLIMTNIAVPPIPIRPSVIVDGSQSNENDITERLKRIIQSNSSLRQDL
IEASSAAKCLASWEILQVEVAQYINSDVRGVPFSMQTSKPLAGFVQRLKGKGGRFRGNLS
GKRVEYTGRTVISPDPNLKITEVGIPIKMATILTYPERVSHHNIEKLRQCVSNGPDKYPG
ARVLRNSDGTEWVLKVNRKSIADSLKYGDIVERHLEDGDVVLFNRQPSLHRMSLMCHRAK
IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEVLV
ASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGADTIDLPTPSVIKPIELWTGKQLFS
VLVRPNSNVRVYLNLTVTEKSYTKTGDGREIEAMCPNDGFVYFRNSELIAGQLGKGTLGN
GNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDSLYDEKEKLI
KEGYDKCGGQIKLYNEGQLPLVPGFDAAQSLETGITSLLNNIRDQTGKLCMQKLHWRNSP
LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRFAKMPAAKGFVASS
FYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKILEDLSVQYDNTVRNSSGSI
VQFCYGDDGMDPAMMEGKESGAPLDFNRLFLKAKATCPAGGSDTLSPEEVSEIVSSRLSK
HDMTPDGGCAAGFKTSLEKFLDKFVKTFRETHETFVLDQNPAWKEKSATLDKIVQNISGV
TSQQLKVFLDTCISRYHSKKVEAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG
VPRIKEIINGAKKISTPIITAVLEWDTNAKFARLVAGRIEKTNLGQVAKSIKTVMTSRAA
SIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKSEHIRVLDIRKLEILPQEADRSRL
YFHLDYLKSMLPKVIVRGVGTVQRVVINEEKEKKEKNDIEVKGDEKKYKLFAEGTGLLVV
MGTEGIDGCKTTSNDVMEVQRTLGIEAARVCIIEEIKKVMKSHGMNIDDRHMIFLADVMT
YRGEVLGITRFGVSKMDKSVLMLASFERTDDILFNASVNGRVDKIEGVSESIIMGIPMQI
GTGMFKVRQSVSSCLEQPTDLGLSRSDVQLDYGPQPILT
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaatagagggcaagccaagaccataatctttaccaaacagcctttcatcgaagacgaa
ggacacctcagaatagaaaaatggaaattcagcgcaatgtccgacaaggagatcaggaaa
atggctgaagttcaaatctttaaaggtcaatattatgattccaatcggaagcctattgaa
ggcggcttattggacccccgcttgggtcctgcaaataggagtagtggtgcatgtgctacc
tgtggtgggacaacgaaggactgcccggggcactttggatacttggtgcttgcccttcct
gttttcaatgttgggtatttaagtactattgtggacatattgaagtgcatttgtaagtta
tgttctggcatacttttggaggagggaatgcgcatcgaatttttgaagaaaatgagacgt
cccaaaatggagcccatgaagaaaagtgagttgatgaaagtgatagtgaagaagtgtaat
agcttgacaaccaataatagaccagtgaagtgctccaaatgtggatttataaatggttca
gtgaagaaggctgtgggtgtgctgggcattatccatgatcgttcaaaatttattggtgtt
atggatgattttagatcagcaatatctcacacgaaagagtccaaagcgtcctttaatccg
gctactcataatctaaaccctgctagagttttttcgctgttcaaaaggatggttgatgag
gattgtgagttgctttatctttcagatagaccagagaacctcataatgacaaacattgcc
gtgccgccgatacctattcgtccttctgttattgtggatggatcacagagtaatgaaaat
gacattacagagaggttgaagagaattattcaatcaaattctagtctccgacaggattta
atagaagcaagttctgcagccaaatgtttggcgagttgggagatacttcaagttgaggtt
gcacagtacataaacagtgatgttcgtggtgttcccttttccatgcaaacttccaagcca
ttggctggttttgtgcagcgcctgaaagggaaaggagggcgctttcgtgggaatttatct
gggaagcgtgtagaatatactggtcgaactgttatatcaccagaccctaatctgaaaatt
accgaggttggaatccctatcaaaatggctacaatattaacttatccagaacgtgtttcc
catcataatattgagaagttgaggcagtgtgtcagtaatggacctgataagtaccctggt
gccagagtgcttagaaattccgatgggactgaatgggttttaaaggttaacagaaagagc
attgctgattcactaaaatatggtgacatagttgaacgccacctagaagacggggacgtt
gttcttttcaacagacaaccaagcttgcatcggatgtctctcatgtgtcatagggctaag
attatgccttggagaacattgaggtttaatgaatctgtttgcaacccatacaatgctgat
tttgatggtgatgaaatgaatatgcatgtcccgcaaacagaagaggcccggacagaagct
cttacgttgatgggggtgcaaaacaatctatgtactccaaaaaatggagaggttttggtt
gcttccacccaagattttctaacgtcctctttccttattacaaggaaggacacattttat
gaccgtgcatctttttctctcatgtgttcatatatgggggatggagcggatactattgac
ttgccaacaccttctgtaattaagccaatagagctatggacaggaaaacaattatttagt
gttctagtacgcccaaattcaaatgtgagagtctatttgaatcttacagttacagagaaa
tcctacaccaagactggagatggaagagaaattgaagcaatgtgcccaaacgacggattt
gtttattttcgtaacagtgagctcatagctgggcaacttgggaagggtactttggggaac
ggcaataaggatggactttactctgttctattgagagactataaagctcatgctgctgct
tcttgcatgaatcgcctggcaaagttaagtgcccgatggattggtaatcatggattctca
attgggattagcgatgtacaaccaagtgacagtttgtacgatgagaaagaaaaattaatt
aaagaaggttatgacaaatgcggtggccagataaagttgtataatgaaggacagctacca
cttgtacctggttttgatgccgcacaatcacttgagactgggataactagtttactaaac
aatattagagatcaaactggaaagttgtgcatgcaaaagctccattggagaaatagtccc
ttgatcatgtcccagtgtggttctaaaggatctcctatcaatatcagccagatggttgcc
tgtgttggccagcaatcagttgggggtcgtcgtgcacctaatggattcatagatcgaagc
cttcctcacttccctagatttgcaaagatgcctgctgcaaagggctttgttgctagttcc
ttttacagtggcttgacagctactgagttctttttccatacaatgggcgggcgagaaggg
cttgtggatacagccgtgaaaacagctgatactggatacatgtctcgtagattgtcaaaa
attttggaggacctatctgtccagtacgataacacagtaaggaattcaagtggatctata
gttcaattttgttatggggatgacggaatggatcctgcaatgatggaaggaaaagaaagt
ggagctcctttggacttcaaccgattgtttttgaaagccaaggccacatgtcctgctgga
ggaagtgataccttgtctcctgaagaagtgtctgaaatagtgagtagcaggctttcaaaa
cacgatatgactcctgatggcggttgtgctgctggtttcaaaacttctttggagaaattc
ctggataaatttgtaaaaacatttagagaaacacatgagacttttgtgctggatcaaaat
cctgcatggaaggaaaagtctgctactctggataagattgtccaaaatatatctggtgtt
acttctcaacagctgaaggtcttcctcgatacttgcatttctcgttatcattcaaaaaag
gtcgaagctgggacagcaattggagtaattggagctcaaagtattggcgaacctgggacg
cagatgacattaaaaacttttcactttgccggagttgcaagcatgaacgttacccttggg
gtccctcgtatcaaggaaataataaatggagcaaaaaagatcagtacacccatcatcact
gcagtacttgagtgggatactaatgcgaaattcgcacggctggtagcaggccggattgag
aaaacaaatctagggcaggttgctaagagtataaaaactgtaatgacttcaagagcggca
tctatagtcatcacacttgatatggtcatgattcaagatgcacacttgtctatagatgct
aatgttgtaaaagaatcaattttacgaacaccgagaatcaaactgaagagcgagcatatt
agggttttggatatcagaaagttagaaattcttcctcaggaggctgataggagtaggctc
tattttcacctcgactatctaaagagtatgctcccaaaagttattgtacggggtgtaggc
acagttcagcgtgttgttattaatgaagaaaaggagaaaaaagagaaaaatgatattgaa
gttaaaggagacgaaaagaagtacaagttgtttgcagaaggcaccggtctactagtggta
atgggcactgaaggaattgatggttgtaaaacgacaagtaatgatgttatggaagtgcag
cggacacttggaattgaagctgctagagtctgtatcattgaggagataaagaaagtaatg
aaatcacacggaatgaacatagacgatcgccatatgatttttctagcggatgttatgaca
tacaggggtgaagttcttggaatcacaagatttggcgtttcaaaaatggacaagagtgtt
ttgatgcttgcttcatttgagcggacagacgatatcctatttaatgctagtgtaaacggg
agagttgacaagattgaaggcgtaagtgaaagcatcatcatgggtatcccaatgcagata
ggcactggaatgttcaaagttaggcaaagtgtttcttcttgtctggagcaacccacagat
ttgggactatcacgttcagatgtgcagctggattatgggccacaaccgattcttacctga
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integrated database retrieval system
