Malus sylvestris (European crab apple): 126618360
Help
Entry
126618360 CDS
T09027
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126618360
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126618360
microRNA pathway
RISC loading complex
126618360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
ResIII
Dicer_dimer
PAZ
dsrm
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126618360
NCBI-ProteinID:
XP_050142352
LinkDB
All DBs
Position
4:complement(30844332..30854726)
Genome browser
AA seq
1397 aa
AA seq
DB search
MEIDGAQLSAGPDPLPFARSYQLEALEAAIKKNTIVFLETGSGKTLIAIMLLRSYAYLLR
KPSRFIAVFLVPKVVLVKQQAEAVKMHTDLKVGMYWGDMGVDFWDADMWKQQLEQYEVLV
MTPAILLSNLRHSFFKLSMIKVLIFDECHHARGNHDYACIMKDFFHRELHSGESELPRIF
GMTASPIKSKGGNSESSYWKIIDELETLMNSKVYTCASESVLAEFIPHSTTKFKYYRHEE
IPGGLVANIINQLNALKEKHELSLESLDLSQSTSQSISNKMKKFYSALTFCLEELGVWLA
LKAAWFFSQKENELFSWGKLDVLGEKIVRNFSSEAYQAFASFLPSDRKWTIANDVTYDLD
KGLLTSKVVCLIQLLHEYRGLKDLRCIVFVERVITAVVIESLFSTFFPKLNDWKTKYIAG
NNNAVQFQTRKRQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPSSTVSSFIQ
SKGRARMQNSDYVLMLKSGDSSTHSRVQNYLASGAIMRKESLRHSSLACTPLEIDLQDDD
FYRVESTGASLSLASSIGLMYFYCSRLPSDGYFKPAPRWDKETCTLHLPKSCPIPDVHVK
GNVKILKQLACFEACKELHKIGALTDNLVPDIVEEEGTQELGSEPYDDVQCSYVPIELVK
PFCSNDPSILYHCYLIELNQNFEYDIPVHNIVLGMRSELDCDIANPHFDLEVGRGSVTVN
FKYVGEIHLNSEQVLLCRRFQITIFQILIDHNLNKLGEVLDGLSSGGNVGIDYLLLPGTR
IHQEAVIIDWRCVTSVLFASEEYSNDHVNCSTLNGCSRLVHTKQGLVCTCMIQNSLVCTP
HNGTIYCITGLLSNLNGNSLLKLRDGRALTYKKYYEERHKINLYFDRQLLLKGRRIFQVQ
NYLQRCRQQKEKESSHTSVELPPEFCSIIMSPISISSVYSYSFVPSIMHQLEALLIAANL
KRIVLDHCTQNVIIPTVKVLEAITTKKCQENYHLESLEALGDSFLKYAASQQLFKTYQNN
HEGLLSVKKEKIISNAALCRLGCDHKLPGFIRNESFDPKNWFIPGDYSGSYLLYEELLYD
GRKIYTRERRKVKSKSVADVVEALIGAFLSTGGEVAAMYFMNWVGIKVDFVHIPCERHFQ
LQPEKLVNVGRIESLLKYSFRDPSLLVEALTHGSYMLPEIPGCYQRLEFLGDAVLDYLIT
IYLYNEYPGMSPGILTDMRSASVNNDCYARSAIKAELYKHILHASHKLHKDIVYTIENFE
RLSTESTFGWDSETSFPKVLGDVVESLAGAIYVDSGYDKEIVFQSISPLLQPLITPETLK
LHPVRELNEHCQKMHYDMKKPVKTSHNGEAAITIEVEANGVTHKHTSTASNKKTALKLAC
KEVLRSLKEATQPATNS
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgacggagcccaattatccgctggccctgatcctctcccattcgccagaagt
taccagctagaagcattagaggcagcaattaagaagaacaccattgtgttcttggagact
ggctctggaaagactctgattgccattatgcttctccgcagctacgcttatttgctccgc
aagccttctcgtttcattgccgtcttcttggttcctaaagttgtcttggtcaaacaacaa
gctgaagctgtgaaaatgcacaccgacttgaaagtgggtatgtattggggagacatggga
gtcgacttctgggatgcggatatgtggaagcaacaattagaacaatatgaggtgcttgtg
atgactcctgcaatattgcttagtaatttgaggcatagcttcttcaaactaagcatgata
aaggttttaatttttgatgagtgccatcatgccaggggtaaccacgactatgcttgcata
atgaaggacttctttcaccgtgagctacattccggtgaatctgaacttccaagaatattt
ggaatgactgcttcccccataaaatcaaaaggtggaaattcagagtcatcgtattggaaa
ataattgatgaacttgagaccctgatgaattcaaaggtgtatacatgtgctagtgaatcc
gtgcttgctgagtttataccacattcaactacaaagttcaaatattacaggcatgaggag
attccaggtggcttggttgcaaatataataaaccagttgaatgctttgaaagaaaagcat
gaactgtcactagaaagtttggatctcagtcaatctacatcacaatccataagcaataag
atgaagaaattttattcagctttaacattttgtttggaagaacttggtgtttggctggct
ttaaaggctgcttggttcttttcccagaaagaaaatgaattgttttcatgggggaaactg
gatgtgttgggcgagaaaattgtgagaaacttcagttctgaagcttaccaggcatttgca
tcttttctaccatctgatcgaaagtggaccattgcgaatgacgttacatacgatttggat
aaggggcttctgacttcaaaagttgtctgtctcatccaattgcttcacgaatacaggggc
ttaaaggatttgagatgtatagtttttgttgaaagggtcataacagctgttgtcatcgaa
tcgttatttagtacattttttcctaaactcaatgactggaagacaaagtacattgcggga
aataacaatgcggtgcaattccaaaccagaaaaaggcagaacgaaattgttgaagaattc
cgtaagggcatggtgaatatcattgttgcaacatcgattcttgaagaggggttagatgtt
caaagctgtaatttggtcattagatttgatccttcctccactgtttctagtttcatacag
tctaaaggtcgtgcaaggatgcaaaactctgattatgtgttaatgttgaaaagtggtgat
tccagtacacattctcgagtacaaaattatcttgcaagtggagctataatgagaaaggag
tccttacgccattcttctcttgcctgcacacctttggaaattgatttgcaggatgatgac
ttttatcgtgttgaaagtactggagcaagcttgagccttgcttcctctattggattgatg
tacttctattgctcaaggctcccttctgatggatattttaaacctgctccaagatgggac
aaggagacttgcactttgcatcttcccaagagctgtccaatacctgatgttcatgtaaaa
ggaaatgttaaaattttgaagcaacttgcatgcttcgaagcttgcaaggaacttcacaaa
attggtgctttaacggataatcttgttccagatattgttgaggaagaaggcacacaagag
cttggatcggaaccgtatgatgatgtacagtgcagctatgtcccaattgaattagtcaag
cccttttgctcaaatgatcctagtatattgtatcattgctacttaattgagctgaatcag
aattttgaatatgatattccagttcataacattgtacttggtatgaggagtgagctggat
tgcgatattgcaaatcctcattttgacttagaagtcggcagaggtagtgtaacagtaaac
tttaaatatgttggagaaattcatctaaattcagaacaggtacttctgtgtagaaggttc
caaatcacaatttttcaaattctaattgatcacaatttgaataagctgggagaagtttta
gatggactttcttcgggaggaaatgttgggattgattatcttttactcccggggaccaga
atacatcaggaagctgtgatcattgattggagatgtgttacatctgtgttatttgcatct
gaagaatattccaatgatcacgtaaattgttcaacgcttaacggctgttcccgtttggta
cataccaaacagggtttggtttgtacatgcatgatccagaattctttggtttgtacccct
cataatggtaccatatattgcatcactggtttgttgagtaacttgaatggaaactcactt
cttaagctcagggatggcagagctcttacgtataagaaatactacgaagaaagacacaag
atcaacttgtattttgatcgacaattgctactgaaagggagacgaattttccaggtgcaa
aattatctacaaaggtgcagacaacagaaagaaaaagaatcgagtcatacatctgttgaa
ttgccacctgaattttgttctataattatgtcacctatatcaatcagcagtgtatattca
tactcatttgttccttcaatcatgcatcaacttgaggctttacttattgctgccaacttg
aaaaggattgttttggatcattgcacacaaaatgttatcattccaaccgttaaggtcttg
gaagctattacaacaaaaaaatgtcaagagaattaccatttggaatccttggaggctctt
ggagattcatttcttaaatatgctgctagtcagcagcttttcaaaacatatcagaacaat
catgaaggccttcttagtgtaaagaaggaaaagataatttctaatgctgccctttgcagg
cttggctgtgaccacaaacttccgggctttattcgtaacgagagttttgacccaaaaaat
tggtttatacctggagattattctggaagttatttactatatgaggagttgctttatgac
ggaagaaagatctacactagggaaagacggaaggtaaaaagtaagagtgttgctgatgtg
gttgaagcactaattggtgcatttcttagcacaggtggggaagtagctgccatgtatttc
atgaattgggttggtataaaggtggattttgtccatataccatgcgagaggcacttccaa
ctgcaaccggagaagcttgtcaatgtcggacgtatagagtccttactgaagtattcattc
cgtgatccttctcttcttgttgaggcactaacccatggttcgtacatgcttcctgagatt
ccaggatgttatcagcggctggaatttctcggggatgctgtgttagattatctgatcact
atatatttgtacaatgagtatcctgggatgtcaccgggaatcttaactgatatgaggtct
gcctctgtgaacaacgactgttatgctcgctctgctattaaggctgagttgtacaagcac
attctgcatgcttcacacaaactgcacaaagatatagtttacacaattgaaaactttgag
aggttatctacggaatcgacttttggatgggattccgagacatcattccccaaggtactt
ggagatgttgtcgagtctctggcaggggcaatttatgttgattctggatatgataaggag
attgtctttcaaagtataagtcctctcttacagcccttgattactccagagacgttgaag
ctccatcccgtaagagagttgaacgaacattgccagaaaatgcattatgacatgaagaaa
cccgtcaagacttcccacaacggtgaggctgccattacaatagaggtcgaagccaatggg
gtcacgcacaagcatacatcaacagcttctaataagaagacggcattgaaattagcctgc
aaggaagttttgaggtccttgaaagaagctacgcagcctgcaacaaattcatga
DBGET
integrated database retrieval system
