Malus sylvestris (European crab apple): 126618455
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Entry
126618455 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126618455
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126618455
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
Motif
Other DBs
NCBI-GeneID:
126618455
NCBI-ProteinID:
XP_050142489
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Position
4:complement(30526376..30528518)
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AA seq
682 aa
AA seq
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MLSMEEVRQWRRWGILRVFSVALCLLFFLHNNNGAFETITISGRRALRSVNGNELNFNQM
LTQQTHNTVELNNGIVRVTFSYPGGDVIGIQYKGIDNLLEIKNPPSNRGYWDLVSKNGLD
RLQGTTFKIVTSTADQIEISFNKTFDISLGDWTLPLNVDKRYIMQRGRAGFYAYAIYERL
EGWPELHLGQTRLVLKLREDKFQFMAVSDDRRRFMPTAKDRDGDHAQALAYREAVLLTNP
SNPDFKGEVDDKYQYSSEVKDIKVHGWISTDDAIGLWMITPSTEFRSAGPFKQELTSHVG
PTSLTVFLSSHYVGRGFGLTFAEGEAWKKVFGPVFVYLNSDIPSSNASFSLWENAKEQMY
EEVKSWPYNFTQSEDFPSSDERGSVAGQLLIWDSYFHEGLDSASYAYVGLAARGYAGSWQ
MECKGYQFWTQADKQGYFYIKDVRPGNYSLYATVPGFIGDYKYEHDITIEPASEINLANI
TFEPPRSGPTLWEIGIPDRSAAEFNIPDPYPTLVNRLFTDNYANKFRQYGLWERYGDYYP
DHDLIYTVGTDNYNDDWFYAHVTRNRNGTYEATTWQIVFQLEDVWTGDYTLQLALASATY
AELQVRFNNQTDTPHFSTGLIGKDNAIARHGIHGLYWLFSVDVPSYRLQQGYNTIYLTQS
RNWGPFAGVMYDYIRLEGPPPE
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgctttcgatggaggaggtgaggcaatggaggagatggggtatcctccgagttttctca
gtcgcactatgtttgctcttcttcctccacaataataatggtgcttttgagacgataacg
atttctggaaggcgagcactaaggagtgttaatggtaatgagctcaatttcaaccagatg
ctaacacaacaaactcataacacggtggagctgaacaatggcattgtccgagtcactttt
tcttatcctggaggagatgtcattggaattcaatacaagggaattgacaacttgctcgaa
atcaaaaaccccccaagcaatagaggttactgggatcttgtctcgaaaaatggcttggac
agactacaaggaacaacattcaagattgttacatcgacggcagaccaaatagagatttct
tttaataaaacttttgatatttccctcggtgattggacgctacccttaaatgttgacaaa
agatacataatgcagcgtggccgcgctgggttctatgcatatgccatatatgagcgtcta
gaagggtggccggaattgcacctaggtcaaacaagactcgttttgaaacttcgagaagat
aaatttcaattcatggctgtatcagacgacagacgaagattcatgccaacagccaaagat
cgcgacggagaccacgctcaggcccttgcctatcgcgaagctgttcttttaactaatcca
agcaatcccgactttaaaggagaggtggatgacaaataccaatactccagtgaagtcaaa
gacatcaaggttcacggttggattagcactgacgatgctataggtctttggatgatcaca
cctagtactgagtttcgttcagcggggccgttcaagcaggaacttacctctcatgtggga
ccaacttccctcactgtgtttcttagtagtcactacgtcgggagaggttttggactgacc
ttcgcagaaggtgaggcatggaagaaggtttttggtcctgtctttgtgtatcttaactcg
gacattccaagctcgaatgcctccttctctctctgggaaaatgcaaaggaacagatgtat
gaagaagtaaagagttggccgtacaatttcactcagtccgaagactttcctagctccgat
gaacgtggatcagttgctggtcagttactaatatgggattcgtacttccacgagggccta
gattcagcaagttatgcttatgtgggattggctgcacgcggatacgcgggatcatggcaa
atggaatgcaagggttatcagttctggactcaagctgacaagcaaggttatttctacata
aaagatgttcgaccggggaactatagtttgtatgcaactgttcccggcttcattggggac
tacaagtacgagcatgatattacaattgaacctgcaagtgaaatcaacttagctaatatt
accttcgaacctccgagaagtggtccaaccttgtgggagattggcatccccgatcggtca
gccgcagagttcaacataccggatccatatccaacccttgtgaaccgtttgttcaccgac
aattacgcaaacaagtttaggcaatatggcttgtgggaacgatatggagattattaccct
gaccatgatctcatctacaccgtcggcacagacaattacaacgatgattggttttacgct
catgtgacaagaaacagaaacggtacatacgaggcaacgacatggcaaattgtatttcaa
cttgaagacgtttggaccggagattatacgctccaattggcattggcttcggccacctat
gctgaactgcaggttcgattcaacaaccagaccgacacacctcatttttcgacaggacta
atagggaaggacaatgccatagcaaggcatggaattcatggtttgtactggcttttcagt
gttgatgtgccgagctatcgactacaacaaggatacaacaccatataccttactcaatca
agaaactggggacctttcgccggagttatgtacgactacatccgactggaaggacctcca
ccggagtga
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