Malus sylvestris (European crab apple): 126618493
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Entry
126618493 CDS
T09027
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl00040
Pentose and glucuronate interconversions
msyl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
126618493
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
126618493
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
126618493
NCBI-ProteinID:
XP_050142538
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Position
4:complement(15028815..15032446)
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AA seq
482 aa
AA seq
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MIPRTCIVLLFLLTSFYPLASAFVNLTLPGQHPNPDEVVLQVNRMVNASLARRHMLQTTQ
KDQLVSACLTGNPIDDCWKCDPDWPNNRQSLADCAIGFGQYAHGGKGGEYYIVTDSSDDD
AVTPRPGTLRYAVIQTEPLWIVFPGNMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITL
QYISNVIIHNVHIHHCHQSGQANVRSSPTHYGFRTESDGDGISIFGSKDIWIDHCSLSHC
KDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMP
RCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSDRNAKEVTKRVETAEGKWR
DWNWRSEGDIMVNGAFFVASGEGMELKYEKAYSVEPKSAVLIDQLIMHAGALGVGGRDNN
LGKWSSDGDGNGLGSGPDYTDDMSGSSSILLPPLPSTCTVFSFFISLSFLLVLYVIPDDM
YL
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgatcccccgaacctgcattgtccttctctttcttctcacctcattttatcctcttgcc
tcagcattcgtcaacctcactctccctggtcagcatcccaacccagatgaagttgttcta
caagttaataggatggttaatgcttcattagcaagaaggcatatgctgcaaacaacccag
aaagaccagctggtttctgcatgcttaactggtaacccgatagacgactgctggaaatgt
gatccagattggccaaacaacaggcaaagcctggcagattgtgcaatagggtttggccaa
tatgctcatggaggcaaaggtggtgagtattacattgtgacggactcttcggatgacgat
gccgtgactccgaggccaggcactctcagatatgctgtgattcagactgagccactctgg
attgtgttccctggcaacatgctcatcaagctctcccaagaactcatattcaacagctac
aaaaccctcgatggccgcggagccaatgtccacattgtgggtggtggatgcatcactctg
cagtacataagcaatgtcatcatccacaatgtgcatatccaccattgtcatcagtcaggt
caggctaatgtgcgttcaagccctactcactatggctttcgcacagaatcagacggtgat
gggatctccatctttggatccaaagacatatggatagaccattgtagcctatcacactgc
aaggatggactgatagatgcagtgatggggtccacaggaataacaatatcaaacaattat
ttttctcatcacaatgaagtcatgctgctgggccacagcgatgactacttgcctgactcc
ggcatgcaagtcaccatagccttcaatcactttggagaaaagttggtgcagagaatgcct
aggtgtagaaggggttatatccacgtggtcaacaatgacttcactcaatgggaaatgtac
gccatcggaggcagtggaaaccctacaattaacagccagggaaaccgctacactgctcca
tcagaccgtaatgccaaggaggtgacaaagcgtgtggagacggcggaagggaagtggagg
gactggaactggagatcggagggggacataatggtaaatggagcattttttgtggcatct
ggagagggaatggagcttaagtatgagaaggcctacagtgtggaacccaagtctgctgtg
cttattgaccaactcatcatgcatgctggtgcccttggtgttggtggcagggacaacaac
ctggggaagtggagctcggacggcgacggaaatggtttaggctctggtccagactatacg
gatgacatgtcgggaagcagcagcattctactgccgccacttccatccacctgcactgtc
ttctcctttttcatctcattgtcattcttgctagttttgtatgttatcccagacgacatg
tatttataa
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