Malus sylvestris (European crab apple): 126618500
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Entry
126618500 CDS
T09027
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog isoform X1
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
msyl01009
]
126618500
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126618500
Enzymes [BR:
msyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
126618500
Protein phosphatases and associated proteins [BR:
msyl01009
]
HAD phosphatases
Fcp/Scp phosphatases
126618500
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
126618500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
126618500
NCBI-ProteinID:
XP_050142547
LinkDB
All DBs
Position
4:26809310..26813649
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AA seq
706 aa
AA seq
DB search
MGKSQPPPQQQPPASVKDTVYKLQLALLDGVKTLDHLYLAGSIISRSDYNDVVTERTIAD
HCGYPLCPNALPPESSRPRKGHYRISLKEHKVYDLHETYMYCSSSCLIESKAFAQSLSEE
RCDVLDYGKVERVLRTFGDVDFEKGEVGLGDIGDLGISKLKIEEKSEADSGDLGISKLKI
EEKSEVQLGDVGVVGPSNAIEGYVPHNQRISKPLGSKKNKKGSKGKEAKMSGGKDMIFNE
MDFMSCIIASDEYSVSKIPPSSGENGCETKVKEPEGKVSHIKNDYEKKSRKSRGEKSTIS
KEDDVGVQEAPSTSETSQTVLNRIIKEAREEFHGDKAEKSNEQMLRSSLKPSGAKKLNRS
VTWADEKVEHRMNGYDTFGSIHKPLFKPSAENGVGCSVTWSDEKIDSTKSKNVSEVREVQ
CAKEGSGVLGNLELQDNERLESAEFCAMALRQAAEAVASGESDVNGAVSSAGIILLPRPD
SVDEEEPNEDVDMLEPEQAPLQPRNPGIPNFDLFDSEDTWFDDPPEGFSLTLSPFLTMWN
SLFTWITSSTLAYIYGRDERFHEEFLSINGKEYPHKIVLAGGHSSEIKKTLAESLARTLP
GVVSQLRLPTPVSSLEQEMSCMLETMTFVDALPAFRMKQWKVVVLLFLEGLSVCRIPALG
PCMPDRRMLFHKVLDGSEITAEHYELMKDHIIPLGRVPEFSAQSGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggggaagagccaaccgccgccgcagcagcagccaccggcttcagtgaaagacacagtt
tacaagctccaactcgctctcctcgacggcgtcaaaaccctagaccacctatacttagcc
ggctcaatcatctcccgctccgactacaacgacgttgtcacggagcgcaccatagccgac
cactgcggctaccctctctgccccaatgccttgcctccggaatcctcccgcccccgcaag
ggccactatcgcatttcgctcaaggagcacaaggtctacgacctccatgagacctacatg
tactgctcctcgagctgtcttatcgaaagcaaggcttttgctcagagtttgagcgaggag
aggtgcgatgtcttggattatggcaaggttgagagggtcttgaggacttttggggatgtg
gattttgaaaaaggggaagtggggttgggggacattggggatttggggatttcgaagttg
aagatcgaagaaaagagcgaagcggacagtggggatttggggatttcaaagttgaagatt
gaagaaaagagtgaagtgcagttaggggatgtcggcgtggttggtccctctaatgctatt
gagggttatgttccacacaatcagcgaatatccaagccattgggttcgaaaaagaacaaa
aaagggtccaaaggtaaagaagcgaaaatgagtggcgggaaagatatgatctttaatgag
atggatttcatgagttgtataatcgctagtgatgaatacagtgtgtccaaaatcccacca
agttctggagagaatggttgtgaaactaaggttaaagaaccagaaggaaaagtttctcat
attaagaatgattatgaaaagaaatccagaaaatcaagaggggaaaaaagtacgatttcc
aaggaagatgatgttggtgttcaagaggccccttcaacatcagagacttctcaaactgtt
ttgaatagaattattaaagaagcaagagaggaattccatggtgataaagctgagaaatca
aatgagcaaatgttgagatcctctcttaaaccttcaggggcaaaaaaacttaatcgctct
gttacttgggctgacgagaaggtggaacatagaatgaatggttatgatacatttggcagt
atccacaaacctttgtttaaaccttcagcagaaaatggagtcggttgctctgttacctgg
tctgatgagaagattgatagcactaagagtaaaaatgtttctgaggttagagaagtgcaa
tgtgcaaaagagggttctggtgtattagggaatttggaattgcaagataatgaacgtttg
gaatccgcagaattctgtgccatggcattgaggcaggcagcagaagctgttgcatctgga
gaatctgatgtcaatggtgctgtttcaagtgctggaattattttattgccacgtccagat
agtgtggatgaagaagagcctaatgaggatgttgacatgcttgaaccagaacaagctcct
ctgcaaccaagaaatcctggaattccaaattttgatttgtttgactctgaggatacttgg
tttgatgatccgccagagggtttcagcttaactttatcaccatttttaacaatgtggaac
tcactctttacatggataacatcatctacgctagcatatatatatgggagggatgaaaga
tttcatgaagaatttctctctattaatgggaaagagtatccccataagattgtcttggct
ggtggtcactcttctgaaatcaagaaaaccctagctgaatctcttgctcggactctacca
ggagttgtttcccaactcaggcttccaacaccagtatctagtttggagcaagaaatgagc
tgcatgttggagacgatgacttttgttgatgcactaccagcattcagaatgaaacaatgg
aaggtggttgttcttcttttccttgagggactctctgtttgcaggatccctgcactcggt
ccttgcatgccggacagaaggatgctgtttcacaaggtgctggatggttcggagataact
gcagaacactacgagcttatgaaggatcatataatacccctgggccgagtacccgaattc
tcagctcagagtggtgcttaa
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