Malus sylvestris (European crab apple): 126618598
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Entry
126618598 CDS
T09027
Name
(RefSeq) transcription factor bHLH140 isoform X1
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
126618598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126618598
Enzymes [BR:
msyl01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
126618598
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
126618598
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
126618598
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
126618598
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
126618598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
zf-C2HE
Macro
HIT
AAA_18
Zeta_toxin
nSTAND3
AAA_16
AAA_17
AAA
KTI12
AAA_22
Viral_helicase1
MeaB
AAA_25
AAA_5
NPHP3_N
CPT
AAA_19
NACHT
DAP3
AAA_14
RNA_helicase
eRF1_2
ATP_bind_1
6PF2K
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126618598
NCBI-ProteinID:
XP_050142669
LinkDB
All DBs
Position
4:complement(23887979..23953471)
Genome browser
AA seq
757 aa
AA seq
DB search
MDMDTDETAKGEEKQGKSVVVILVGAPGSGKSTFCEHVMRSSSARPWVRVCQDTIKNGKA
GTKAQCIESAMNALKDGKSVFIDRCNLEKEQRDEFVKLGGSTQVEVHAVVLDLPAKLCIS
RSVKRTGHEGNLQGGRAAAVVNRMLQKKELPKLSEGFARITCCQSESDVQSAVDAYSGLG
PLDTLPSGYFGQKNTGAKVQLGIMRFLKKTDGPANTESTSKSVLDSNASRITEEKETSSK
GTGSLSENSRKESREGEELFVGSIGGDVSVNNSPTLAFPSISTADFQFDIEKASDIIVEK
VIEFFNKLGNARLVLADLSHKSKILSLVRAKASEKNIDSNKFFTFVGDITRLHSGGGLHC
NVIANAANWRLKPGGGGVNAAIFSAGGPSLEVATKEQAQSLYPGSAVVVPLPSTSPLFSR
EGVTHVIHVVGPNMNPHRPNCLNNDYSKGCKVLREAYTSLFEGFATIVRTQAKSPKGSIE
NLQAKLPESQEHSDGASRNHFTNSDQKTKREDPHKYERSKRSKAYQDDTEDSNTGKPNLS
NQSGGSRTKSWGSWAQALYNTAMHPEKHKDAVLEISDDVVVLNDLFPKAKRHVLVVARCE
GLDRLSDVHKEHLPLLSTMHEVGLKWVEKFLHDDSSLVFRLGYHSDPSMRQLHLHVISQD
FDSTHLKNKKHWNSFNTAFFRDSVDVVEEVSSDGKAKLKDDGSLLSMELRCHRCRSAHPN
IPRLKSHITNCRATFPSTLLQNGRLVHAQAMSALVRR
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggacatggataccgacgaaacagccaaaggggaagaaaagcaaggaaagtccgtcgtg
gtaatattggtaggtgcgcccggaagcggaaagtccaccttctgtgagcatgtcatgcgc
tcctcctccgctcgcccctgggttcgcgtttgccaggatactataaaaaatggtaaagcc
ggaacgaaagcgcagtgtattgagagtgcaatgaatgcattgaaggatgggaagagtgtt
tttatagatagatgtaatctggagaaagaacaaagggatgagtttgtgaagcttggtggt
agtacccaggttgaagttcatgctgtggtgcttgatcttcctgccaagctttgtatatcg
cggtctgtgaagagaacgggccacgagggaaacttgcaaggtgggagagctgctgcggtt
gtgaatagaatgctgcagaagaaagaactgcctaaactgagtgaagggtttgctagaatc
acttgttgccagagtgagagtgatgttcaatctgccgttgatgcatatagtggacttggt
ccgttggatacacttcccagtggttattttggccagaagaacaccggtgcgaaagtacaa
ctaggtataatgaggttcttaaagaaaacagatggtcctgcgaatactgaatccacttcg
aagagtgtactagattctaatgcttctcgaattactgaagaaaaggaaacctcttcgaag
ggaacaggttcattgtctgaaaattctcgtaaggagtcaagggaaggtgaagagctattt
gtaggctctattggtggtgatgtttctgtaaacaattcccccactctggcatttccctcc
atatcgacagcagattttcaatttgacattgagaaggcgtctgatattattgtcgagaaa
gttatagaattttttaataagcttggaaatgctaggcttgttttagcggacttgagtcat
aaatcaaagattttgtctttggtaagggctaaagcttcagagaaaaacattgactccaac
aagttcttcacatttgtgggagatatcactcggcttcattcaggaggaggtttacactgc
aatgtaatagctaatgctgctaattggcgtcttaaacctggaggtggaggtgtcaatgct
gcaatcttcagtgctggaggtccatctttggaggttgcaaccaaagaacaagcccaatct
ttgtatcctgggagtgctgtggttgtgcctctcccttcaacttctcccttgtttagtagg
gaaggggtaacccatgtcatacatgttgttggacccaacatgaacccacacagaccaaat
tgtcttaacaatgactatagtaaaggctgcaaagttctccgggaggcttacacttcactt
ttcgaaggtttcgcaacaattgtgaggacccaagcaaagtcacccaagggaagcattgag
aacctgcaggcaaagctgccagagtcacaagaacattctgatggtgcctctagaaatcat
tttacaaacagcgatcaaaagaccaagagagaggatcctcacaaatatgagaggagcaaa
agaagtaaagcatatcaggatgatactgaagattctaacactggtaaaccaaacctgagc
aaccagtccggtggaagcaggactaaatcgtgggggtcatgggctcaggctctctacaac
actgctatgcacccagagaagcacaaggatgcagtactggagatatcagatgatgtcgtt
gtgctgaatgatctttttccaaaggcaaaaaggcatgttttggtggtggcacgatgtgaa
ggccttgatcgactgtcagatgttcataaagaacaccttccattgttaagcacaatgcat
gaagttggtctgaagtgggttgagaaattcttgcatgatgattcatctttggtcttccgt
cttggatatcactcggatccctcaatgcgacagctgcatctgcatgttatcagccaggat
tttgattcaacacacttgaagaataagaaacattggaactccttcaatactgctttcttt
cgagactccgtggatgtggtagaggaagtcagtagtgatggaaaagcaaagctaaaagat
gacggtagcctgttgtctatggagttgcgatgccaccgatgtagaagcgctcaccccaac
ataccccgattaaagtctcacattactaactgtcgagccacctttccaagcaccctgctc
caaaatggtcgtcttgttcacgcacaagcaatgtcagcattggtccgtaggtga
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