Malus sylvestris (European crab apple): 126618815
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Entry
126618815 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126618815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126618815
03012 Translation factors [BR:
msyl03012
]
126618815
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126618815
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126618815
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126618815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
T2SSE
AAA_16
AAA_23
Myosin_head
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126618815
NCBI-ProteinID:
XP_050142947
LinkDB
All DBs
Position
4:10428474..10448141
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AA seq
1157 aa
AA seq
DB search
MRNSRAALGLLLKSVSNNNPCCCFPSSRKTNGRCRTLLLLLQPHSSSSISDGGARFLISK
RAFCGYAAEQFSDDEYTCEFEGQKASSSVANIDEWKWKMSLLLRSEKDQEIVSRDKRDRR
DYEQISNLAKRMGLYCEIYGKAVVASKVPLPNYRPDLDDKRPQREVVIPLGLQRRVEGLL
QEHLDRLQLNSGKFTGNRGDSEHLGQVENANLDENADSLLDGSVMEKVLQRRSLRMRNMQ
RAWQESPEGKKMLDFRKSLPAFKENERLLQAIAQNQVIVISGETGCGKTTQLPQYILESE
IESGRGAFCSIICTQPRRISAMAVAERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCT
SGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNA
ELFSSYFGGAPTIHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQDKLWKTQKQLV
PRKRKNQITALVEDALNKSSFESYSGRARDSLSCWTPDCIGFNLIEAVLCHISRKERQGA
VLVFMTGWEDIRSLRDQLKAHPLLGDPNRVLLLTCHGSMGTSEQKLIFGRPPPNIRKIVL
ATNMAEASITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISQASARQRRGRAGRVLPG
ECYHLYPKCVYHAFAEYQLPELLRTPLNSLCLQIKSLQVASIGEFLSAALQPPEPLAVQN
AIGFLTSIGALDENENLTSLGKYLSILPVDPKLGKMLIMGAVFHCFDPVLTIVSGLSVRD
PFLLPQDKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTL
QAIHSLRKQFNYILRDAGLVDADASINNKLSHNQSLVRAIICSGLFPGIASVVHRETSMS
FKTMDDGQVLLFANSVNARYQTIPYPWLVFGEKVRVNTVFIRDSTGVSDSILILFGGALN
HGVQAGHLRMLDGYIDFFMDPSLVDCYLKLKEELNELIQKKLEDPSLDIHKEGKYLMLAV
QELVSGDQCEGRFVFGRDSRKPKESGDNSRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKH
LKTNEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSENHRDEEDNSPPDVTD
NMLKLLGKRRRSKRQSG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaattcgagggcagcacttggtctccttctcaagtcagtctccaacaataaccct
tgttgttgttttccttcttcccggaagacaaacggtcgctgccgcactttgcttcttcta
ctccaaccccactcttcttcttcaatttccgacggcggagcccgattcctcatttcaaag
cgcgccttttgcgggtacgccgccgagcagttctccgacgatgagtacacgtgcgaattc
gaaggccaaaaggcatcgtcttcagtggcgaacattgacgagtggaaatggaaaatgagc
ttgctattacgcagcgaaaaggaccaagagattgtatccagagataagagagataggaga
gactatgagcagatatctaaccttgccaaaaggatgggactttattgtgaaatatatggg
aaagcggtggtggccagcaaggtccctcttccaaactacaggcctgatttggatgataag
cggccacaaagagaggtggttatccctcttggcttgcaaaggagggtagagggtttgctg
caagagcaccttgatcgactccagttaaactctgggaagttcactggaaatagaggggac
tctgagcaccttggtcaggtcgaaaatgcaaacctggatgagaatgcagattctcttcta
gatgggtctgtaatggagaaggttcttcaaaggaggagtttgcgaatgcgtaatatgcaa
agagcttggcaggaatcacccgaaggcaagaagatgctagacttccgcaaatcactaccg
gctttcaaggagaatgaaaggttgctgcaagcaattgcacagaatcaggtaatagtgata
tctggggagactggatgtggtaagaccactcaacttcctcaatatatcctagagtcagaa
atagaatctggccgtggagcattctgtagcatcatttgcacacagcctcgaagaatatct
gctatggctgttgcagaaagagtgtcggcagagaggggagagcctcttggtgaaacagtt
ggctataaagttcgattggagggaatgaagggaaaaaatacccatctgcttttttgtaca
agtggtattttacttcgccgtctgttgagtgatcgtaacttgaatggtataacccatgtt
tttgttgatgaaattcatgagcgaggcatgaatgaagatttcttattgattgtgctgaag
gatctgcttccacgccgtcgggatttgagattggttttaatgagtgctactctgaatgct
gagctgttttcaagttattttggaggagctcctacaattcatattccgggctttacatat
ccagtaagagcacactttttagaagatgtactggaaatgactggatataagttgacttcc
ttcaaccaaattgatgattatggccaagacaaactgtggaaaacacagaagcagttagtg
cctcggaaaaggaaaaaccagattactgctctggttgaggatgctcttaataaatcaagc
tttgagagttacagtggcagggcacgtgattcactatcatgttggacacctgattgcatt
ggatttaatttaatcgaggcagttttatgccatataagtcggaaggaacgacaaggtgct
gttttagtattcatgactgggtgggaggatatacgctctttgagggatcaacttaaagca
catccacttttaggtgatcctaacagggttttgcttctaacatgccatgggtcaatggga
acatctgaacagaaactcatatttggaagaccacctcctaacattcgtaaaatagtcctt
gcaacaaatatggcagaagcaagtattacaatcaatgatgtagtttttgtggtggattgt
ggaaaagcaaaagagacctcgtatgatgctttgaataatacaccttgtctgctaccttct
tggatatcgcaagcatctgctcggcaaagaaggggtagggctggccgggtgctgccaggc
gaatgttaccacctttatcccaaatgtgtttatcacgcttttgctgaatatcaacttcct
gaactgctcagaactcctttgaactctctttgcttgcaaattaaaagtttgcaggttgct
agtataggggaattcttgtcagctgccttgcagccaccggaacccctagctgtccaaaat
gccattggttttcttacttcaattggggcattagatgagaatgaaaatttgacaagtctg
ggaaaatatttgtcaatacttccagtggatcccaaactagggaaaatgctgattatgggt
gctgtgtttcattgctttgatcctgttcttactatagtgtctggtctaagtgtcagggat
cctttccttttgcctcaagacaaaaaagatttagcagggacagcaaaatctagattctct
gcaaaagattacagtgatcatatggctcttgttcgtgcatatgaaggatggaaagatgct
gaaagagaaggatcagcatatgaatattgctggagaaatttcctttctgctcaaacactt
caggctatccattctcttcggaagcagtttaactacattttaagagatgctggattggtg
gatgcggatgcaagcattaacaacaagctaagtcacaaccagtccttggttcgtgcaatc
atatgttctggacttttccctggaatagcatctgtggtgcaccgagagacgtccatgtca
ttcaaaacgatggatgatggccaggttctactatttgctaattctgtgaatgcgcgttac
caaacaattccttacccctggttggtctttggtgagaaagtaagggtcaatactgtattc
atacgtgattccactggtgtatctgattcgatcctgatcctttttggtggtgcgttgaac
catggcgtccaggctgggcatttgagaatgttggacggttatatcgacttcttcatggat
cctagtttggtggactgctatttgaagcttaaggaagaacttaatgagcttattcaaaag
aagcttgaagatcctagccttgatatccacaaggaagggaagtaccttatgcttgctgtt
caagagctggtttccggagatcaatgtgaagggagatttgtatttggtcgtgacagcaga
aagccgaaggaatctggtgataacagtagattcactaaagacggaaccaatcctaagagt
ttgcttcaaactctgttgatgagagcaggacattctcctccaaaatacaaaacaaagcac
cttaagacgaatgagttcagagcactggtggagttcaagggcatgcaatttgtcgggaaa
cctaagaaaaataagcagcttgcagaaagggatgctgctatagaagcactggcctggttg
actcatacctcagaaaaccatcgcgatgaagaagacaactccccccctgacgtcactgac
aatatgctcaaacttctcgggaaacgtagaagatcaaaacggcagtctggttga
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