Malus sylvestris (European crab apple): 126618839
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Entry
126618839 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126618839 isoform X1
KO
K24155
rabconnectin-3a
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
126618839
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126618839
Membrane trafficking [BR:
msyl04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
126618839
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
126618839
RAVE complex
126618839
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR5
Beta-prop_EML
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_TEP1_C
EIF3I
WD40_Gbeta
Beta-prop_WDR36-Utp21_1st
Beta-prop_VPS8
Beta-prop_WDR36-Utp21_2nd
Motif
Other DBs
NCBI-GeneID:
126618839
NCBI-ProteinID:
XP_050142992
LinkDB
All DBs
Position
1:complement(16823502..16842986)
Genome browser
AA seq
2561 aa
AA seq
DB search
MPDVDAPSASQTSISAVGPTHHLPLQILRSDPTPPAPTRSDPPGSTIDWLPDFLEFSWVA
YGASSLLVISHLPSPLSDTETLIGPIFRQVFELSGDPSSAVEAVSWSPAMPSIGELAAAA
ENCVWVFSHDSATSKGSFCWSQNAVLVQSTKVKAIRWTGSGDGIVSGGVEVVLWKRNGRF
WEIAWKFKAELPQSMVTATWSLDGPFATAAYQSKWQTEGLSTNKASKCVLVCQSDGKSGF
LKSDLHHPHAVSMIQWRPSTGRHLNRDARHPPRQVLLTCSTDGTIRLWCEVNDGRGRKFG
KDMNDPKTMRCSFSVAAVIEINQALNGLLGTDIYVMWATEIGGVCKTREGSKQIFSTKGY
LQDLAGNCEWLIGFGPGMLVNFWAIHCLDDVSPIRFPRVTLWKTQKLQGLKVGNSNWTGL
SNCKDGIPLNKVVISRNCLSGPPTLCSLVQLLPCNSLVWSRIHTQTSNNIEDTPINKSGA
ENIISCSAGGLLNLDGHAGRILQVDVHPYSCEVELAVSLDSCGLLLFWFFSTISNCILDR
PTLIPTWELCGKLATQGSCSKYTSLRWAPSIGNEAVILLMGHAGGIDCFVVKIHHNEEES
IECHYLCTIPFTGHGPYVDGPASIFSIPLPSTCPKTLKSNKLLLLGVWMNGFQALSWEIT
LHSFDLSRSYCECNFDAGNASEGSMWGFETTFADKRYCLNVKPCSSQIPDPHTHDEVTSF
AVVYPGRKICMEKNLASIIDLCYPPYIMATGCSDGSLKLWRSVMDKPSTPHIPWELVGKF
QAHQGPISHVCLSDCGRKIATLWKELSSNTVSTLHIWDSVLLAGAGSFMLEHTISFGQDL
VALNWLSFGNGQLLLGVCTKNQLQVYTQQRCGSQTLLNSEKSLKRDIWVCIASTHTFPLI
NDFFWGPRASAVFVHSSYFCVNSQWLFLADKKHLVNVDPSYIMENCLDSVGGMEEDISSG
IFIDCGLGQFSKILLDNNRRDCKSDIPLEIDLKKDYLSSSLFVARAQLKCSGATKVSIWT
MHEVVEQLSGSLPVYHPEALFMNIYSGNWKRAYIALRHLNEFLSSNSSPERKCSPAKSSN
CIPQIPLSNFLDAHISINSNDKVFQWSGDASVFSSSSPFQRGFGQFTNSLDSYGSSNMIN
SSSTKSELNDFIEPFEKLYKSADISDIEKIQILAIIDLLTELCSSNSSSAYESLDEPGRR
FWVGLRFQQLHFFRKSGRSASVEELVIDSKLIGWAYHSDCQENLFGSFLPNDPSWQEMRN
LGVGFWFTNTAQLRSRMEKLARLQYLKRKDPKDCALLYIALNRIQVLSGLFKISRDEKDK
PLVGFLSRNFQEEKNKAAALKNAYVLMGRHQLELAVAFFLLGGDTSSAVNICAKNLGDEQ
LALVICRLAEGRGGPLERHLITKFMLPSAIEKGDCWLGSLLEWELGNYSQSFTCMLGFQI
NSATEKYALLSNGAPFSDPNVGLYCLMLATNNCMKNAVGEQNSALLGRWAILTTATALNR
CGLPLEALEYLSSSPNIPGDTDERGTSDLGHSENLRAILNPSPRNSSNWLSSNVALHLEF
QAKSDLTLQYLSKLVREHPSWVDIVFGSFQASTCVKECKNQEYVKVLESFQQKLYTTLNQ
LEQKFSVVPFHLVSMILISLYDCGLWFVGYDILHRYTAQNQDLDKIQSADKFLSYALMHK
LLLKATRETSLLFSRVIVACGITCSVLKSHYIEDNVSGDSRSTGSDALEYYFQGLILLLR
SLRAALGTTFCSTTEDLIMKPLTIIDLMEYYVHLAYAWHHRNSKVLLLLVQPLLITFTNG
HTPYEVDMKNMKKLLTQIPEVAVQNNVGLHVSQERNITHLVPEDERWQIISVCLWQHISR
FMQHNLNVLSYNLDDDGCFAGEPHQKYFSWAPISASLDSHSSSLKELIGLVSLSLVKLLK
PTLSQVASYHVKQLASLLQHKMDNGLRVTTLVWLEESNKSQPGALNQHLNQDNVKLDTIG
ERLEADMLWDACADPKIIYESFAKEKIDLSHSLDHKPCNGWGTINRGIGAADETEEIHHH
EVTLNSSSPNSEAGSPAKSVFRGGHSFLSAWQKDTTITKEVTPFLNPKEIYKRNGELLEA
LCLNSIDQSQAALASNRKGIIFFNWKDDIPFRDHSDYIWSLADWPPNGWAGSQSTPAPTF
VSPGVGLGSKKGAHLGLGGATVGVGSFARPGRDLTGGGAFGVPGYAGMGASGLGWETQED
FEELVDPPATVENANTRAFSSHPSRPFFLVGSSNTHIYLWEFGKDKTTATYGVLPAANVP
PPYALASISALQFDHCGHRFATAALDGTVCTWQLEVGGRSNIGPTESSLCFNSHASDVAY
VTSSGSIIAVAGYSSNSVNVVIWDTLAPPTTSRASILCHEGGARSLAVFDNDIGSGSVSP
LIVTGGKGGDVGLHDFRYIATGRSKRHRHSDKGEQVIKTSSNNDTHSENGTKFGEQNQNG
MLWYIPKAHSGSVTKISIIPNTSLFLTGSKDGDVKLWDAKKAKLVHHWPKLHERHTFLQP
STRGFGGVVQAAVTDIKVVSHGFLSCGGDSTVKLVQLKDHI
NT seq
7686 nt
NT seq
+upstream
nt +downstream
nt
atgccggacgtagacgcaccctccgcttcccaaacctctatatccgccgtgggccccacc
caccacctccctctacaaatcctcagatccgacccgacacctcctgccccgacccgatcc
gacccaccgggatccaccatcgactggctccccgattttctggaattttcatgggtcgcc
tacggagcctcatcgctactagtgatctcccacttaccctccccactctccgatacagaa
acactcatcggacccattttccggcaggtattcgagctctccggcgacccctcatcggcc
gtcgaagctgtttcttggtcccctgccatgccctcgattggcgagcttgctgccgcagct
gagaattgcgtttgggtgttctcgcatgactcggcgacgtccaaaggttctttttgttgg
agccagaatgcagtacttgtacagtcgacgaaggttaaggcaatcagatggacgggctca
ggggatggaattgtttccggtggagttgaggtggttttgtggaaaagaaatggcaggttt
tgggaaattgcttggaagtttaaagcagaattaccacaaagtatggtcaccgcaacttgg
tctctcgatggaccatttgcaactgcagcttatcagagtaaatggcagactgaaggattg
tcaactaataaggctagcaaatgtgtgttagtatgtcaaagtgatggaaaatctggattt
ttgaaatccgacctacatcatcctcatgctgtctcaatgattcaatggaggccatctacc
ggtaggcatttaaacagagatgcaagacatccaccaaggcaagtgttgctcacttgtagc
acagatggaactattaggttatggtgtgaggttaatgatggaaggggaagaaaatttggt
aaggacatgaatgaccccaaaacaatgagatgctctttttctgtagccgcagtaatagag
ataaaccaggctttgaatggacttctgggcactgatatatatgtgatgtgggctacagaa
attgggggtgtatgtaaaactcgtgaaggatctaaacaaattttctccacaaaaggttat
ctgcaggacctggctggtaattgcgagtggttgattgggtttggccctggaatgttggta
aatttctgggctatacactgtctcgacgatgtctcaccaatacgatttccgcgggttact
ttatggaagacacagaaactgcaaggtctgaaagtgggaaattctaattggactggactt
tctaactgtaaagatggaatacctcttaataaagttgttatctcaaggaactgcttgtct
ggtccaccaacattatgctctttggttcagttattaccttgtaattccttggtttggtca
cgaatacatactcagacgtcaaataatatagaggatacacccattaataaatctggtgca
gagaacatcatatcatgttcagctggtggactcctgaatttggatggtcatgctggaaga
atcttacaagtagatgtgcatccttatagctgtgaagttgagttggctgtctctttagat
tcttgtggattacttcttttttggttcttttctactatttcaaactgcatcttggaccgg
ccaacactaattccaacatgggagctttgtgggaagcttgcgactcaaggttcatgctcc
aaatatacaagcttgaggtgggcaccatcaattggaaatgaagcagttattcttcttatg
ggacatgctggagggattgattgctttgttgtaaaaattcatcacaatgaggaagaaagt
atagaatgtcactacttatgtacaataccttttacaggtcatggtccttatgtggatggt
cctgctagtatcttttcaattcctttgccttcaacttgtcctaaaaccctaaaatctaat
aaacttttgcttttgggtgtatggatgaatgggtttcaggctctttcttgggaaataacc
ttgcattcttttgatttatcaagaagctactgtgagtgcaattttgatgcaggaaatgcg
tctgaaggcagtatgtggggatttgaaactacttttgctgataaaagatattgtcttaat
gtaaaaccttgctcatcacagatcccagatcctcacacgcatgatgaggttacaagtttt
gctgtggtctacccaggtagaaagatctgtatggaaaagaatttggcttctattattgat
ctatgctatcctccatatattatggcgacaggttgctccgatggtagtttgaaattgtgg
aggagtgtcatggataaaccatcaacgcctcacattccatgggaacttgtgggtaagttt
caggcacatcaaggacctattagccatgtatgcttatctgactgtggtcgtaagatagca
accctttggaaggagctttcttcaaatactgttagcactcttcatatatgggactctgta
ctcctagcaggtgcagggtcttttatgctagaacatacaatatcctttggtcaagatctt
gttgctttaaattggctatcatttggaaatggtcagttattacttggagtttgcacaaaa
aatcagttgcaagtatatacccagcagcgttgcggtagccagactttattaaactctgaa
aaatcattgaaaagggatatatgggtctgcattgcgtcgactcataccttccctctcatt
aatgatttcttttggggccccagagcatcagctgtgtttgttcatagtagctacttttgt
gtaaatagtcagtggttattccttgcagataagaaacatcttgttaatgtcgatccaagt
tacatcatggaaaattgcttggattctgtgggtggaatggaagaggacattagttctgga
attttcattgattgtggacttggtcaattcagtaaaatattacttgataacaacagaaga
gattgcaagtctgatattccattggagattgatttgaaaaaggattatctttctagcagc
ttgtttgtagcaagggctcaactgaagtgtagtggggctactaaagtaagtatatggacc
atgcatgaagtggtcgagcagttaagtggatctctgccagtttatcacccagaggctctc
tttatgaatatctattcaggaaattggaagcgtgcttacattgctctgaggcatcttaat
gagtttctctcttctaattcttctcctgagaggaagtgtagccctgcaaagtctagcaat
tgcattccgcagattcctttgtcaaatttccttgatgcacatatctcaataaattcaaat
gacaaagtatttcagtggagtggtgatgcctctgtattttcgtcatcttctccgtttcaa
agaggctttggccaatttacaaacagtttggactcttatggttccagtaatatgatcaat
tcttcctcaacaaaatctgaactcaatgactttattgagccttttgagaagttgtacaag
tcagcagatataagtgacatagagaagattcaaattcttgccattatagatcttcttact
gaattgtgtagttcaaactctagttctgcatatgaaagtcttgatgaacctggacggagg
ttttgggttggattgaggtttcagcaactacattttttccgaaagtctggtagatcagca
tccgtggaagagttggtaattgactccaagttgattggatgggcctaccactctgattgc
caggagaatttatttggttcgtttctacctaatgatccatcttggcaagaaatgcggaat
ttgggtgtaggattttggtttacaaatacagcacagttgcgttcaaggatggagaaactg
gcaagattgcagtatctgaaaaggaaagatcctaaagactgtgcattgctgtacattgca
ctgaatagaattcaagttttgtctggccttttcaaaataagcagggatgagaaggataag
ccccttgttggatttctttcacgcaattttcaggaggagaaaaataaggcagcggctttg
aagaatgcatatgtcttaatggggagacatcagctggaattagcagttgctttctttctg
cttggaggtgatacttcttctgcagtcaatatttgtgcaaagaaccttggggatgaacag
cttgcattagttatctgtcgactagctgagggtcgtggtgggccactagagagacactta
attacgaagttcatgctaccatccgcaattgagaagggcgactgttggttgggaagcctt
ttggagtgggagctgggaaattactctcaatcttttacatgcatgcttggtttccaaata
aattctgcaactgaaaagtatgcacttttgtccaacggtgctcctttttcagacccaaac
gttggtctgtattgtctaatgctagcaaccaataattgcatgaaaaatgctgttggggag
caaaatagtgcattactcggaaggtgggcaatattgactacagctactgcattaaacaga
tgcggtcttccacttgaagctttggagtacctttcatcttcaccaaacattcctggggat
acagatgaaaggggtacatcagatcttgggcattctgaaaatctgcgtgcaattctaaat
ccttctcccagaaattctagcaattggttatcaagtaatgtggctctccatctggagttc
caagccaaatcagatttgacacttcaatacttatcaaagttggtaagagagcatccaagc
tgggtggatattgtctttggatcttttcaagctagtacatgtgtaaaggagtgcaaaaat
caggaatatgtaaaagttcttgaatctttccaacagaagttatacacaacactaaatcag
ttggagcagaagttttcagtggttcctttccatcttgttagcatgattttaatctcgctg
tatgattgtgggctgtggtttgttggatatgatatattacatagatacactgctcaaaat
caagatctagataaaatccaatcagctgacaaattcctatcatatgctcttatgcataag
ctgcttttgaaggccaccagagaaacttcccttttgttttcacgcgttattgttgcctgc
ggtataacatgctctgttctgaagtcgcattatattgaagacaatgtgtctggtgatagt
agatctacagggtcagatgctttggagtattactttcaaggtcttatactgttattgagg
agtttaagggctgctttgggaacgaccttttgctccaccacggaagatctcataatgaaa
ccccttacaatcattgatttgatggagtattatgtacatcttgcatatgcttggcatcat
agaaactctaaagttctcttactattggtgcaaccccttctgatcacatttactaatggg
catacaccttatgaagttgatatgaagaatatgaagaaactcctcacccagattccagag
gtggcggttcaaaataatgtgggccttcatgtttctcaagagagaaatataacgcatttg
gttccagaagatgaaagatggcaaatcataagtgtttgcttatggcaacacatatccaga
ttcatgcaacataacttaaacgtattgtcgtataaccttgatgatgatggctgttttgct
ggtgaaccccatcaaaaatatttttcatgggcacctatctctgcaagtttagattctcat
agcagcagtctgaaagaactgattgggctggtctcattgagcttagtaaagttattgaag
cccacactttcacaggttgcctcttatcatgtaaaacagttagcatcacttctacagcac
aaaatggataatgggttgcgtgtgacgactcttgtttggttagaagaatctaacaagtct
caacctggagctctcaatcagcatctaaatcaggataatgtcaaattggacacaataggt
gaaagacttgaagctgatatgttatgggatgcctgtgctgaccctaaaataatatacgaa
agttttgccaaggaaaaaatagacttgtctcactctcttgatcataaaccctgtaatgga
tggggtaccataaacaggggcatcggggctgcagatgaaactgaggaaattcaccatcat
gaagttacactcaatagtagttctcccaacagtgaagctggatcacctgctaaaagtgta
tttcggggtgggcattctttccttagtgcctggcagaaagacacaaccattacaaaggaa
gtcacaccttttctaaacccaaaggagatatataagagaaacggggagcttttggaggca
ttgtgtctcaactccattgaccagagtcaagctgcacttgcaagcaaccgaaaggggatt
atattttttaattggaaggatgatatccctttcagagatcattcagattatatttggtca
ctggctgattggccaccaaatgggtgggctggttctcagtcaacccctgctccaacattt
gtttctcctggtgttggtcttggaagcaagaaaggagcacaccttggattgggtggagca
actgttggtgtgggttcttttgcaaggccaggaagagatttgacgggtggtggagcattt
ggggttccaggttatgctggtatgggtgcatctggtttaggttgggaaactcaagaggac
tttgaggagcttgttgacccaccagctactgtggagaatgcaaatacgagggctttttcc
agtcacccatctagacctttcttcttggttgggtctagcaatacacacatctacttatgg
gagtttggtaaggacaaaactactgcaacttatggagtgctgcctgctgcaaatgtccct
ccgccttatgctcttgcatcgatatccgctttgcagtttgaccactgtggacacaggttt
gctactgcggccttagatggaactgtgtgcacgtggcagctggaggtcggaggaaggagt
aacattggtcctacggagtcatctctatgctttaacagccacgcatccgatgttgcttat
gtcacttcaagtggatcaatcattgctgtggctggatatagttccaatagtgttaatgtg
gttatatgggatacattggctccacctacaacctcacgagcttctattctttgtcatgaa
ggtggtgcacgctctcttgcagtgtttgataatgacataggaagtggttctgtctccccc
cttattgtgactggtggtaaaggtggtgatgtcggacttcatgatttccggtacattgct
actggaaggagtaaaaggcataggcattcggataaaggtgaacaagtcatcaagacatca
tcgaataatgatacgcattctgaaaatggcaccaaatttggggaacaaaatcaaaatggg
atgctttggtatataccgaaggctcactcagggagtgtgaccaagatatccataatccca
aacacgagtttgttcttaactggaagcaaagatggagatgttaagctttgggacgccaag
aaagctaagttggtacatcactggccgaagttgcatgaaagacacacatttttgcaacca
agcactcgaggctttggcggagtagtccaggctgctgtcacagatataaaagtcgtttca
cacggttttctttcgtgcggtggagacagcactgtaaagttagttcaactcaaagaccac
atctga
DBGET
integrated database retrieval system
