Malus sylvestris (European crab apple): 126618956
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Entry
126618956 CDS
T09027
Name
(RefSeq) pre-mRNA-splicing factor 38-like isoform X1
KO
K12849
pre-mRNA-splicing factor 38A
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126618956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126618956
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126618956
Complex C
U4/U6.U5 tri-SnRNP related factors
126618956
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Gene cluster
GFIT
Motif
Pfam:
PRP38
PRP38_assoc
HIND
Motif
Other DBs
NCBI-GeneID:
126618956
NCBI-ProteinID:
XP_050143146
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Position
4:complement(27402687..27406000)
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AA seq
376 aa
AA seq
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MANRTDPSAKSIRGTNPQNLVEKIVRTKIYQNTYWKEQCFGLTAETLVDKAMELDHIGGT
FGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNDDYKYVRILGAFYLRLTGTDTDVYQYL
EPLYNDYRKLRRKLPDGNFTLTHVDEVIDELLTNDYSCDIAMPRIKKRWTLEATGSLELR
KSALEEDFEEEEEKEENDQVDGMDEDVHDRDYYHDRSPARERERDRRRDSHRYRDRDYDR
DYDRDRDYDRERGRGHERDRDRDRDRDRDHYWLRDEKDYGRDRDRDRERDWDRRERDRGR
RRSRSRSRSRSRDRDGGHRDRKRHGRSVSPRRPDREEPKKKKEKKKEKKDDGTDHPDPEI
AEANRLRASLGLKPLK
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaccgtacggacccgtcggcgaagagcataagggggacgaacccgcagaacctg
gtggagaagatcgtacggacgaagatataccagaacacgtactggaaggagcagtgcttc
gggttgacggccgaaacactagtcgacaaagccatggagctcgaccacatcggcggcacc
ttcggcggcaaccggaagcccacgcctttcatgtgcctcgtcatgaagatgcttcagatc
cagccggagaaggagatcgttatcgagttcataaaaaatgacgattacaagtacgttcgg
atactcggtgcattttatttgcggcttacgggaactgatactgatgtctaccagtaccta
gagcctttgtataatgactatcggaagttgaggaggaaactgcctgatgggaattttacc
ttgacgcatgtggatgaggttattgatgaacttctcacaaatgattactcatgtgacatt
gcaatgccacgaattaaaaaaagatggactctcgaagcaactggttcattggaactcagg
aaaagtgctttggaggaggactttgaggaggaggaagagaaagaggagaatgatcaagtt
gatggaatggatgaagatgtccatgatagggattattatcatgaccgaagccctgccagg
gaaagggaaagggatagaagacgcgacagtcacagatacagggaccgagattatgacaga
gactatgatagggatagagactatgacagggaacgtgggcgtgggcatgaaagagatagg
gacagagacagggatagggatcgggaccattattggctaagagatgaaaaggattatggt
cgtgatagggatagggatcgggaaagggattgggacaggcgagaaagggatcgtggcagg
aggaggagccgttcaagaagcagaagtcgtagtagagatcgtgatggtggacatagagat
cgcaagagacacggccgcagcgttagtcccagaagacctgatcgtgaggagccgaagaag
aagaaagaaaagaagaaggagaagaaggatgatggcacagaccatccggatccagagatt
gctgaagcaaacagactccgagcatctcttgggttgaaacccctgaagtag
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