Malus sylvestris (European crab apple): 126619244
Help
Entry
126619244 CDS
T09027
Name
(RefSeq) ATP-dependent RNA helicase DEAH13-like
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126619244
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126619244
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
Helicases
126619244
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
nSTAND3
AAA_RNF213_3
ATPase
Motif
Other DBs
NCBI-GeneID:
126619244
NCBI-ProteinID:
XP_050143505
LinkDB
All DBs
Position
4:30563397..30570107
Genome browser
AA seq
1348 aa
AA seq
DB search
MELCLGDGGVDSNALVLPAKRRNKRKGTNQECGKPNKRRKAPTVSKSQRRRLKKLEGSGK
PNKSKAPMVSKSQQRKLKKLEDEKEKALSISKSIEALEKYELPEAAYSLLQSSKNIGKVE
SKKEKRQKAVLFSKAGFEAFMTDPQPFNKVDSDQTSSESEPEVEKTQSRRDIGKNDLVQS
KILQKEIQKKTSFSLDSSQGQVCGRGQGVNGGTAAASSVITNAISNKLEMSLQQDTNISP
TSCVNGDNEISKTDHIKETPKANVSRVSKSSISPALRPLISPTIVHVSRPEEVENTRKDL
PIIMMEQEVMEAVNDHSTVIICGETGCGKTTQVPQFLFEAGFGSSSSSVRSGIIGVTQPR
RVAVLATAKRVAYELGLHLGKEVGFQVRYDKRIGESCSIKFMTDGILLRELQNDFLLKRY
SVIVLDEAHERSLNTDILIGMLSRVIRTREERYAEQQKEMLSGRTISPDQRIFPLKLVLM
SATLRVEDFISGKKLFHDPPPVIEVPTRQFPVSIHFSKRTKEKDYIEQAYKKVLAIHKRL
PRGGILVFVTGQREVEYLCQKLRRASKAQIIKTSKGDNRSDASAVSEINSAEEIDMKEIN
EAFEIHGSSEGHQTDRFSSIDEDQYDIDEDELDASYDSETGSELESFGEDGDSLFHDIPE
NDSNVSEVLGEEGGIASLKAAFEALAGKTSLNSNSDVKEPISDTVDSCYNPPNPSMGKKC
RFEDNNSPGALHVLPLYAMLPAAAQLHVFEEVKEGERLVVVATNVAETSLTIPGIKYVVD
TGKEKVKNYNSSSGMETYEVQWISKASAAQRAGRAGRTGPGHCYRLYSSAAYSNIFPDFS
LAEISKVPVDGVVLLMKSMNIDKVSNFPFPTPPDGAALDEAERCLKILQALDKGGRLTPL
GRAMAHYPMSPRHSRMLLTVIQVLSKKKSSGANLVLAYAVAAAAALSLSNPFVRQFEDSH
KESHELNEDGNIKVIDKLEKLGRKKLKETVKMFREKFSNPSSDALSVAFALQCYELAESP
VEFCNANGLHPKTMEEMSKLRKQLLQLVFNQSGVCGGENDFSWTFGSREDVEHVWRVSHG
KNPLSLYEEELLRQAICAGWADRVAKRIRGSSVSSEGDRKVHAVRYQACMLKERVFLHRW
SSVSNSAPEFLVYSELIQTRHPYMHGVTSVKTEWLVEYARSLCTFSAPPTDTKPYYEPLN
DRVLHYVIPAFGPHLWELPLHADPIEDHKDRVSVFAYGLLNGQVLPCLRCVVESMAAPPA
TVLRPEAAGQARVGNLLAKLRVKKIDSCAMLRKVWKENPSELKTEMLDWFQESFRRKYFE
TLWSQMHVEVLLEPQERFPKTRRRGEQK
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggaactctgcttgggagatggcggggtagatagcaacgccctcgtattgccagccaag
agaaggaacaaaaggaagggcaccaatcaggagtgtggaaaacccaataaaagaagaaaa
gcgccaacggttagcaaatcccagcggaggaggctcaagaagttggaggggagtggaaaa
cccaataaatcaaaagcaccaatggttagcaaatcccagcagaggaagctgaagaagttg
gaggatgagaaggaaaaagccctttcaatctccaaaagcattgaggccttagagaaatat
gagcttccagaggctgcatattctcttctgcagtcttcaaagaatattggcaaggttgag
tctaaaaaggagaaacgtcagaaggccgtactattttccaaagctggctttgaagctttc
atgactgacccccaaccatttaacaaggtagatagtgaccaaacttctagtgaaagtgaa
cctgaggtagaaaaaactcaatcaaggcgggatattggcaagaatgacctggtgcagtcg
aagatattacaaaaagaaatccaaaagaagacatctttttcattggactcatctcagggt
caagtttgtggcagagggcaaggcgtcaatggcggaactgctgctgcctcatcagttatt
acaaatgctattagcaacaaacttgaaatgtctttgcaacaagatacaaacatttctccc
acttcatgtgtgaatggtgataatgaaatatcaaagacggaccacataaaagagacacca
aaagcaaatgtcagcagggtgagtaaatcatcaatttctcctgcactgaggcctctaatt
tccccaaccatagtccatgtatcaagacctgaggaagttgaaaacacaaggaaggatctc
cctataataatgatggagcaggaggtaatggaggctgttaatgaccattccactgttatt
atatgtggagagactggttgtggtaaaaccacccaagttcctcagtttctttttgaagct
ggctttggttctagctcctcttctgtacgaagtggtataattggtgttactcaacctcgc
cgtgtggcagtccttgctactgctaagcgtgtggcatatgagcttggtcttcatttaggt
aaagaggttgggtttcaagttaggtatgacaaaaggattggtgaaagttgctccatcaaa
ttcatgacagatggaatattactacgggaacttcagaatgactttttgttgaagcgatac
tctgtcatagttcttgatgaggctcatgagcggagcttgaacaccgacatacttattgga
atgctttcacgtgtaattcgtactcgcgaggaaagatatgcagagcagcaaaaagaaatg
ctttcaggaagaactataagtcctgatcaacggatttttccattgaaacttgttctgatg
agtgccaccttgcgagtggaagacttcatttctggtaaaaagctttttcatgatccccca
ccagttatagaagttcccaccagacagtttcctgtatccattcacttctcaaagagaact
aaggaaaaggattatattgagcaagcatataaaaaagtcttggcaattcacaagaggctg
ccacgtgggggcatacttgtctttgtcactgggcagagggaagtagagtacttgtgccaa
aaactgcgtagagcttcaaaggcacagattataaaaacatctaaaggagataacaggagt
gatgccagtgcagtttctgagataaattctgctgaggaaatagacatgaaggagattaat
gaagcgtttgagattcatggaagttcagagggccatcagactgatagatttagctctatt
gatgaagatcagtatgatatagacgaggatgagttggatgcctcatatgattcagaaaca
gggagtgaactggaaagttttggcgaggatggtgattcattgttccatgatatccctgaa
aatgatagtaatgtttctgaagttttaggagaggaggggggaattgcttcactgaaagcc
gcttttgaagctttagctggaaaaacttctttaaactccaactctgatgtgaaagaacct
atttcagatactgtagactcttgctacaacccacccaatcctagcatggggaaaaagtgt
cggtttgaagataataattctcctggtgcattgcatgttctccctctttatgcaatgctg
cctgcggcagctcaacttcatgtatttgaagaagtcaaggaaggagaacgtcttgttgtt
gtggccactaatgtggctgaaacctctttaactatacctgggataaagtatgttgtcgat
actggaaaagagaaagtgaagaactacaattcctcaagtggcatggaaacatatgaagta
cagtggataagtaaggcatcagctgctcaacgtgcaggaagagcgggaagaacggggcct
ggccactgttaccgtctgtattcttctgcagcatatagtaacatatttcctgacttttct
ctggctgaaatatctaaggtccctgtggatggtgttgtccttctcatgaaatccatgaat
attgacaaggtatccaattttccatttccaactcctccagatggtgctgccttggatgaa
gcagagcgttgcttgaagattcttcaagcacttgacaaaggtggaagactgacacctcta
gggagggccatggctcattaccccatgagtcctcgccactctaggatgctccttactgtt
attcaagtcctgagtaagaagaagagttccggagctaatttagtactagcatacgcagtt
gcagcagctgctgctttgagtttgtcaaatccttttgtcaggcagtttgaagatagccac
aaagaaagccatgaattaaacgaggatgggaacattaaagttatagacaagctagagaag
ttggggaggaagaaactaaaagaaactgtgaaaatgttccgtgaaaaattttctaatccc
agcagcgatgctctgtccgtagcttttgctttgcagtgctatgaacttgcagagagccca
gtggaattctgtaatgccaatggtctacacccgaaaacaatggaggaaatgtccaagctg
agaaagcaactactccagcttgtctttaatcaaagtggtgtttgtggtggcgagaatgac
ttttcatggacttttggaagtcgggaagatgttgaacatgtttggagggtttcccacggt
aagaaccctctttcattgtatgaggaagagctcctacgccaagctatctgtgctggttgg
gcagatagggtggcgaaacgcattagaggaagttcagtgtcatctgaaggagatagaaaa
gttcatgcagttcgatatcaagcctgcatgcttaaagagagagtgtttctccaccgttgg
tcatctgtttctaattcagcccctgagtttctggtatacagtgagttgatacagacaaga
catccttacatgcacggtgttactagtgtaaaaacagaatggcttgttgagtatgctcgg
tctctgtgcactttctcggcacccccaacagataccaaaccttactatgagcctcttaat
gaccgagtattacattatgtcattccagcctttggtcctcatttgtgggagcttccacta
catgctgatccaattgaagaccataaagaccgagtatctgtttttgcttatggtttgctg
aacggccaggtgctgccatgtttaagatgtgttgtcgagtctatggcggcccctcctgct
actgttttaaggccagaggcagcaggtcaagcacgcgtagggaatcttttggccaagctg
agagtgaaaaagatagacagttgtgctatgttaagaaaggtctggaaggagaatcccagc
gaattgaaaacagaaatgctagactggtttcaagagagtttccgccgcaagtattttgaa
actctttggtcgcaaatgcacgttgaagttcttttagagccccaagaacgattccccaag
acaaggaggagaggagagcaaaagtga
DBGET
integrated database retrieval system
