Malus sylvestris (European crab apple): 126619535
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Entry
126619535 CDS
T09027
Symbol
LOC126619535
Name
(RefSeq) 5'-3' exonuclease family protein isoform X1
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03410
Base excision repair
msyl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126619535 (LOC126619535)
03410 Base excision repair
126619535 (LOC126619535)
03450 Non-homologous end-joining
126619535 (LOC126619535)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126619535 (LOC126619535)
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126619535 (LOC126619535)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126619535 (LOC126619535)
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
126619535 (LOC126619535)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
126619535 (LOC126619535)
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
126619535 (LOC126619535)
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126619535 (LOC126619535)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XPG_I
XPG_N
5_3_exonuc
5_3_exonuc_N
HHH_5
HHH_2
PM2_P3
Motif
Other DBs
NCBI-GeneID:
126619535
NCBI-ProteinID:
XP_050143887
LinkDB
All DBs
Position
4:complement(26392019..26396711)
Genome browser
AA seq
416 aa
AA seq
DB search
MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGE
VTSHLQGMFSRTIRLLEAGIKPLYVFDGKPPELKKQELAKRYSKRADATDDLAAAVEDGN
KEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVPVVEAPSEAEAQCAVLCKSGKVYAVASED
MDSLTFGAPRFLRHLMDPSSRKIPVMEFDIAKVLEELNLTMDQFIDLCILSGCDYCDSIR
GIGGQTALKLIRQHGSIENILENINKERYQIPEEWPYQEARRLFKEPVALSDEEQVEIKW
TAPDEEGLIAFLVNENGFNSDRVAKAIEKIKAAKNKSSQGRLESFFKPTANPSVPIKRKG
SKCVLKCPKPATRHKMFFLQDCNPSRPTVIGSISLPILHLGSKHLMPLAKGVCFGT
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgggtataaagggtttaacgaagctgctggcggacaatgccccgaaggccatgaaggag
cagaaattcgagagctatttcggccgaaagatcgccatcgatgccagcatgagcatttac
cagttccttattgttgtgggaaggactgggactgagatgctcaccaatgaggctggtgaa
gttactagtcatctgcaaggcatgttttcacggacgattaggcttctggaagctggaatt
aaaccactctatgttttcgatgggaagcctccagagttgaagaaacaagagctggcaaag
cgttactcaaagagggcagatgccactgatgatttggcagcggctgtagaggatggcaat
aaggaagacattgagaagtacagtaaacgaacagtaaaggtgacaaagcagcacaatgat
gactgcaaaagacttctcaggctcatgggggtgcctgtagttgaggccccctcagaagca
gaggcacagtgtgctgtactttgtaaatcaggaaaggtttatgctgtggcctctgaagac
atggattcccttacatttggagcgcctaggtttcttcgtcatttgatggatcctagctca
aggaaaatccctgtcatggaatttgatattgctaaggtgttggaggagctaaatcttacc
atggatcaattcattgacttgtgcattctgtccggatgtgattattgtgacagcattcga
gggattggaggacagacagctttgaagcttatccgtcagcatggctccattgagaatata
ctcgagaacataaacaaagaaaggtaccaaataccagaggagtggccctatcaagaggct
cggagactttttaaggaaccagttgctttatctgatgaagaacaagttgagattaaatgg
acagctccagatgaagaaggactgattgcatttttggtgaatgaaaatggatttaacagt
gacagagtggcaaaggcaatagaaaaaattaaagcagccaagaacaagtcatcgcaggga
agacttgaatcatttttcaagccgactgctaacccatctgtgcccattaaacgaaaggga
agcaaatgtgtgcttaaatgtcccaaaccagcaaccaggcataagatgttctttctacaa
gattgtaatccatcgaggcccactgtcattggcagcataagtctgccaattcttcatttg
ggctccaagcacttgatgccattagccaaaggcgtctgttttggcacatga
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