KEGG   Malus sylvestris (European crab apple): 126619561
Entry
126619561         CDS       T09027                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03030  DNA replication
msyl03410  Base excision repair
msyl03420  Nucleotide excision repair
msyl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    126619561
   03410 Base excision repair
    126619561
   03420 Nucleotide excision repair
    126619561
   03430 Mismatch repair
    126619561
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:msyl03032]
    126619561
   03036 Chromosome and associated proteins [BR:msyl03036]
    126619561
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126619561
DNA replication proteins [BR:msyl03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    126619561
  DNA Replication Termination Factors
   ELG1-RFC complex
    126619561
Chromosome and associated proteins [BR:msyl03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    126619561
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     126619561
  Check point factors
   HRAD17(Rad24)-RFC complex
    126619561
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Rad17 Mg_chelatase AAA_16 Viral_helicase1 RCF1-5-like_lid AAA_24 AAA_5 AAA_11 RuvB_N nSTAND3 AAA_assoc_2 AAA_25 AAA_19 AAA_28 ABC_tran AAA_30 DNAX_ATPase_lid MeaB bpMoxR RNA_helicase AAA_18 KTI12 DO-GTPase1 IstB_IS21 NTPase_1 AAA_3 AAA_7 FtsK_SpoIIIE SLFN-g3_helicase SRP54
Other DBs
NCBI-GeneID: 126619561
NCBI-ProteinID: XP_050143926
LinkDB
Position
4:8326304..8330219
AA seq 330 aa
MASSSSSSAYDMPWVEKYRPTKVADIVGNEDAVSRIQVIARDGNMPNLILAGPPGTGKTT
SILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPSGRHKVVILDEAD
SMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLTDEEILGRLMI
VVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATNSGFRFVNQENVFKVCDQPHPLHVK
NMVRNILEGKFDDACSGLKQLYDLGYSPTDIITTFFRIIKNYDMAEFLKLEFMKETGFAH
MRICDGVGSYLQMCGLLAKLSLVRETAKET
NT seq 993 nt   +upstreamnt  +downstreamnt
atggcgtcgtcttcttcttcgtcggcctacgacatgccgtgggtggagaagtacaggccc
accaaggtcgccgacattgtgggcaacgaagacgccgtgtccagaatccaggtcatcgct
cgcgacggcaacatgcccaacctcatcttagccggtcctcctggaactggtaagaccact
agcatactggctcttgcgcatgagcttttgggaccaaactataaggaggctgttttagag
ctgaatgcatcagatgacaggggaatcgatgttgtgaggaacaaaattaaaatgtttgct
caaaagaaagttacactgccttctggacgccataaagttgtcatcttggatgaagctgac
agcatgacatctggagcacaacaagctctgaggcgaacaatggaaatatattcaaattcc
actcgtttcgctcttgcgtgcaatacatcttccaaaatcattgagcctattcagagtaga
tgtgcccttgtccggttttctagattgactgatgaggagatacttggtcgcctaatgata
gtggttcaagctgagaaggttccatatgttccagaaggtcttgaagcgattattttcacc
gctgatggtgatatgaggcaggcactgaataacttgcaagctacaaacagtggattccgg
tttgtgaaccaagaaaatgttttcaaggtctgtgaccagcctcatccgttgcatgtaaag
aatatggtgcgcaacatactggaagggaaatttgatgatgcttgttcgggtctcaagcag
ctctacgatctgggttactccccaacggacataatcacaacttttttccgtatcataaaa
aactatgatatggctgagtttttgaaactggagttcatgaaggaaactggatttgctcac
atgagaatctgtgatggagttggctcgtaccttcagatgtgtggtcttctggctaagctt
tccctagtccgtgaaaccgcgaaggaaacataa

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