Malus sylvestris (European crab apple): 126620807
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Entry
126620807 CDS
T09027
Name
(RefSeq) DNA polymerase delta catalytic subunit
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03410
Base excision repair
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
msyl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126620807
03410 Base excision repair
126620807
03420 Nucleotide excision repair
126620807
03430 Mismatch repair
126620807
03440 Homologous recombination
126620807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126620807
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126620807
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
126620807
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
126620807
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
126620807
MMR (mismatch excision repair)
DNA polymerase delta complex
126620807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
DNA_pol_B_2
divDNApol
zf-ribbon_3
Motif
Other DBs
NCBI-GeneID:
126620807
NCBI-ProteinID:
XP_050145064
LinkDB
All DBs
Position
1:381958..402948
Genome browser
AA seq
1086 aa
AA seq
DB search
MNKGISRKRPTPPQQAANPSKQQATSPEDEFVDEDEDVFLDETLFETEDDLVLRDIEQRQ
SLASRLTKWARPPPSHAYTSASRSVAFQQLEIDYVIGESHRELLPNWSGSAAIIRIFGVT
KEGHSVCCHVHGFEPYFYINCFPVMGPDDISRFHQILEGRMGEVNRNSKVPKFIRRIEMV
QKRSIMYYQQQDSEPFLKIVVALPTMVASCRGILEKGILIDGLGMKKFMTYDSNVLFALR
FMIDCNIVGGNWIEVPAGRYKTTKPLSYCQLEFHCLYSDLISHTPEGEFSKMAPFRILSF
DIECAGRKGHFPEPTHDPVIQVANLVTMQGENQPFIRNIMTLKSCAPIVGVDVMSFDTER
EVLLAWRDLLCEVDPDVIIGYNICKFDLPYLIERAETLGIAEFPILGRIKNSRVRVKDTT
FSSRQHGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIIS
DLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPMSFLLSRGQSIKV
LSQLLRKAKQKNLLIPYVKKAGSEQGTYEGATVLEAKAGFYEKPIATLDFASLYPSIMMA
YNLCYCTLVTPEDVRKLNIPPECVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKAD
LKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKN
LVNDKFTTLKGYEHNAEVIYGDTDSVMVQFGVPTVEAAMDLGREAAEYISGTFIKPIKLE
FEKVYHPYLLISKKRYAGLLWTNPGKFDKMDTKGIETVRRDNCLLVKNLVNECLHKILID
RDIPGAVQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYGVKAAHVELAERMRKRDAAT
APNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENNIPIDPQYYLENQISKPLLRLFEPIL
KNASKELLHGSHTRSISISTPANSGIMRFAKKQLTCVGCKALLSKSDHTLCSHCKGREAE
LYCKTVAHVSELETLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKVQ
LDRWSF
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaggcataagcagaaaacggccaacgccgccacaacaggcggcgaacccatcc
aagcagcaggccacgtccccagaagacgaattcgtggacgaggacgaggacgtcttcctc
gacgaaacccttttcgagactgaagacgaccttgttctccgcgacatcgagcagcgccag
tccctagcttcccgccttaccaagtgggcccgcccgcctccctcccatgcctacacttcc
gcttcccgaagcgtcgcttttcagcaattggagattgattatgtaattggagagagccat
agagaattgctgcctaattggtccgggtctgctgccattatccgaatttttggggttaca
aaggaaggacatagtgtttgctgccatgttcatggatttgagccatatttctatatcaac
tgtttccccgttatgggccctgatgatatttccaggtttcatcaaattcttgaggggagg
atgggagaggtcaacaggaacagcaaggtaccaaaattcattcgccgtattgaaatggtg
cagaagaggagtatcatgtattaccagcagcaggattctgaaccctttctcaaaatcgtt
gttgctttgccaacaatggtggccagctgccggggcattcttgaaaaaggcatactaatt
gatggccttggtatgaagaaattcatgacatatgatagcaatgttctttttgctcttcgt
ttcatgattgattgcaacatagttggtggaaattggattgaggtccctgctggaagatat
aagacaactaagcccttgtcgtactgccagttagagttccattgcctatattcggacttg
atcagccatactccagaaggggaattttcgaagatggctccatttcgcatattgagcttt
gatattgagtgtgctggccgtaaaggtcattttcctgagcctacccatgatcctgttatc
caggtggccaacttagttactatgcagggagagaatcaaccttttattcggaacatcatg
actcttaagtcgtgtgctccaatagttggtgttgatgtgatgtctttcgatacagaaagg
gaagtcttactggcttggagggatttactctgcgaggtggatccagatgtcataattgga
tataacatctgtaaatttgatttgccatatctcattgagagagctgagacgttgggaatt
gctgaatttccgatacttggccgcataaaaaacagcagggttcgggtcaaagacactact
ttttcttcaaggcagcatggaaccagggaaagtaaagaagtaacagttgaagggagggtt
caatttgatttactccaggctatgcaacgagattacaaattaagttcttattcattgaat
tctgtctcagcacactttctttctgagcagaaagaggatgtccaccattcaattatatct
gatcttcagaacgggaatgcggaaactaggaggcgacttgctgtgtattgtctgaaagat
gcttacctcccacaaaggcttttggacaaactgatgtatatttacaattatgtagagatg
gctagagtgacaggtgttccaatgtcatttcttctttccagaggacagagcatcaaggtc
ctttcgcagcttcttaggaaggcaaagcaaaagaacctgcttattccatatgttaaaaag
gctggatcagagcaaggaacgtatgaaggtgccactgttttggaagcgaaggcaggattc
tatgaaaagccaattgccactttggattttgcatctttatatccatcaatcatgatggcc
tataatctatgctattgcactttggtgacacctgaagatgttcgcaaactcaatatccct
ccagaatgtgtcaacaaaactccatctggagaaacatttgttaaatccaatttgcagaag
ggaatacttcctgaaattcttgaagaattattagctgctcggaagagagcaaaagcggat
ttgaaggaagcaaaagatccacttgagaaggcagtgcttgatggtcgacaattggcctta
aaggtaagtgccaattccgtatatgggtttactggagctactgttggccagttaccatgt
ttagagatatcatcaagtgtcaccagctatggtcgacagatgattgagcacacaaagaac
cttgtaaatgacaaatttaccacacttaaaggctatgaacacaatgctgaggttatatac
ggggacacagactcagttatggtgcaatttggggttcccacagttgaagcagcaatggac
ttggggagagaagctgctgaatacataagtggaactttcataaaacctatcaaacttgaa
tttgagaaggtttatcatccatatcttctgattagcaagaagagatatgctggtttattg
tggacaaatcctggcaagtttgacaaaatggacactaaaggaattgaaaccgtaagaaga
gacaattgcttattggtcaaaaacctggtaaatgaatgcctgcacaaaatactgattgat
agagatattcctggggcagtccagtatgtcaagaataccatctcagatcttctcatgaat
cgcatggatttgtctcttttggttatcactaagggtcttacaaaaacgggggatgattat
ggagtaaaggcagctcatgttgaacttgctgaacgtatgcgcaagcgagatgctgccact
gctccaaatgttggggatcgggtgccttatgtcattattaaagctgcaaaaggtgccaag
gcttacgagaagtcagaggatcccatctatgtgcttgaaaataacattcccatagatcct
caatactatcttgaaaatcaaattagcaagccactcttaagactttttgagcccatcttg
aagaatgctagcaaggaacttctccatggaagccacacaagatctatttcaatctccacc
cctgcaaacagtggaataatgagatttgcaaagaaacaactcacatgcgttggctgcaaa
gctctacttagcaagtcggaccatactctttgctcacactgtaagggaagagaagctgaa
ctctattgcaaaacagtggctcatgtgtctgagctagagacgctttttgggcggttatgg
acacagtgccaagagtgccaaggctctctacatcaagatgtgctctgcacaagtcgggac
tgccctatattctataggagaaagaaggcacagaaagacatggctgaagctaaagtgcag
ttagaccggtggagcttttga
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integrated database retrieval system
