Malus sylvestris (European crab apple): 126620813
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Entry
126620813 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126620813
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126620813
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
EMC7_beta-sandw
RhgB_N
NOMO1-like_2nd
Motif
Other DBs
NCBI-GeneID:
126620813
NCBI-ProteinID:
XP_050145078
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Position
1:complement(11623686..11630210)
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AA seq
676 aa
AA seq
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MEKVRQWSWVLGILGMLALLFFLPDDGNFAKISVRRALRSVTGSNNGLDQMLIKTKNQVV
MDNGIVRLTFSYPGGDVIGIKYKGIDNLLEIKNQENNRGYWDVVWNNKEKGGIDKLQGRR
FKIITARADQTEISFTKTYDISRGNATLSMNVDKRYIMQRGRAGFYAYSIFERPKGWPGL
DIDQIRIVYKLQQDKFQFMAVSDDRQRVMPTADDRSNGVKLAYPEAVLLTNPSNPDLRGE
VDDKYQYSSEDKDNKVHGWICTKPAVGFWIITPSDEFRTAGPFKQDLTSHVGPTALSMFV
STHYAGKEVGMRFARGEAWKKVFGPVFVYLNSVPSLNESALWEDAKEQLVEEVKSWPYSF
TQSEDIPSSSGRGSVAGQLLVRDRYTSKSLVWASSAYVGLAAPGKAGSWQKESKGYQFWT
QANEQGHFLIKDVRPGNYSLYATVPGIIGDYKFKSNITIEPGSEINLANLTYVPPRNGPT
LWEIGIPDRSAAEFYVPDPNPTLMNKLFTTNRAHKFRQYGLWERYADLYPDEDLIYNIGT
DNYSDNWFFAHVTRNIGNRTYEATTWRILFELQDLTNTGNYTLQLALASATNAEVQVRFN
NQSAFPPHFTTGLIGKDNAIARHGIHGLYWLFSIGVPSYRLREGNNTIYLTQSRSLGTFE
GVMYDYIRLEGPPPRK
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtacggcaatggagttgggtccttgggatattgggaatgctcgctttgctc
ttcttcttgcctgatgatggaaacttcgcgaagatttccgtaagaagagcactaaggagc
gttactggatcaaataatgggctcgaccagatgctaataaagactaaaaaccaggtggta
atggataatggcattgtccggcttacgttttcttatcccggaggagacgtcatcggaatc
aagtacaagggaatcgacaacttacttgaaatcaagaatcaggaaaataatagagggtat
tgggatgttgtctggaataacaaagagaaaggaggtatcgacaaactacaagggaggaga
tttaaaattattactgcgagggcagatcaaacagaaatttcttttacgaaaacatacgat
atttctcgaggaaatgccacactttccatgaatgttgacaaaaggtacataatgcagcgt
ggtcgcgccgggttctatgcgtattccatatttgagcgtcccaaagggtggccgggattg
gacatcgatcaaattagaattgtgtacaaacttcaacaagacaaatttcaattcatggct
gtgtctgacgacagacaaagggtcatgccaacagccgatgaccgttcaaacggtgttaaa
cttgcctatcctgaagctgttcttttgaccaatccaagcaatcctgacctcagaggagag
gtggacgataagtaccaatactcaagtgaggacaaagataacaaggtccatggatggatt
tgcactaagccagctgtaggcttctggatcatcacacctagtgatgagtttcgcacagct
gggcccttcaagcaggacctcacctctcatgtaggcccaaccgccctctcaatgtttgtt
agtactcactatgctgggaaggaggttgggatgagatttgcaagaggtgaggcatggaag
aaagtttttgggcctgtctttgtgtatctcaattcagttccaagtttaaatgagtccgct
ctctgggaagatgctaaagagcagttagttgaagaagtcaagagctggccatacagtttc
actcaatcagaagacattcctagctcaagcggacgcggatcagttgccggtcaattacta
gtacgggatcggtacaccagcaagagccttgtttgggcaagttctgcatatgtaggattg
gctgcacctggaaaagcgggatcatggcaaaaggaaagcaagggttatcaattctggact
caagctaacgagcaaggtcatttcctcattaaagatgttcgacctggaaattatagtttg
tatgcaactgttcccggcattattggggattacaaatttaagtctaatattacaattgaa
ccaggaagtgaaatcaatttggctaatcttacctacgtacctccaagaaatggtcccacc
ctgtgggaaattggcataccggatcgatccgcggccgagttttacgtaccggatccaaat
cccacccttatgaacaaattgttcactaccaatcgcgcacacaagtttaggcaatatggc
ttgtgggaacgatatgcagatttataccctgatgaagatctcatctataacattggtact
gataattatagtgataactggtttttcgctcatgtgacgaggaacatcggaaatcgtacg
tatgaagcaaccacatggagaattctttttgaacttcaagatttgacaaataccggaaat
tatacactccaattggcattggcctcagccactaatgcagaagtgcaggttcgattcaac
aatcagagcgccttcccacctcattttacgacagggctaatagggaaggacaatgccata
gctaggcatggaattcatggtttgtactggttgttcagtattggtgtaccaagctaccga
ctacgagaaggaaacaacaccatctatcttactcagtcaagaagcttgggcactttcgaa
ggagtgatgtacgactatatccgactagaaggacctcctcctcgaaagtga
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