Malus sylvestris (European crab apple): 126620818
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Entry
126620818 CDS
T09027
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
126620818
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
126620818
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
EMC7_beta-sandw
RhgB_N
Motif
Other DBs
NCBI-GeneID:
126620818
NCBI-ProteinID:
XP_050145092
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Position
1:complement(11606299..11613000)
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AA seq
675 aa
AA seq
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MEKVRQWSWIIGALAMLAFLLFMHGDGFKKTPVRRLQAGVTGADTGVNPMLTKTKNQVVI
DNGIVRLNLSYPGGDVIGINYKGIKNLLETKNAIDNRGYWDVVWNRDGGKDVVDKLQGTG
FRVITERADQIEISFTKTYNVSLGNATLPMNVDKRYIVQRGRDGFYAYAIFERLKGWPRT
NVDQIRFVYKLQQDKFPFMAISDNRKRVMPTARDRANGKPLAYPEAVLLTKTSNPDLRGE
VDDKYQYSTEDKDNKVHGWICNEPPVGFWIITSSDEFRTAGPFKQDLTSHAGPTVLSMFA
STHYGGKEVGMTFKDGEAWKKVFGPVFVYLNSVRSSNNSLRLWENAKEQMLEEVKRWPYN
FTQSEDFPSSDKRGSVAGQLLIQDRYINESLVWASSSYVGLAAPGNVGSWQKESKGYQFW
TQTNKQGYFLIKDVRPGNYSLYATVPGVVGDYKYETIIKIKPRRGINLGNITYVPPRNGP
TLWEIGIPDRSAAEFNVPDPSPTLRNQLYTNHTDKFRQYGLWDRYTDLYPNHDLIYTVGA
DDYHDKWFFAHVTRNTGNNTYEATTWRILFQLKNLTTTGNYTLQLALASANNAEVQVRFN
NQSTKPPHFTTGLIGKDNAIARHGIHGLYWLFSIIVPSYRLQEGNNSIFLTQSRRLGSFD
GVMYDYIRLEGPPQW
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtaaggcaatggagttggatcattggggcattagcaatgcttgcctttttg
ttgttcatgcatggtgatggtttcaagaagaccccagtaagaaggttacaagcgggtgtt
actggggcagataccggggtcaatccgatgctaacaaagactaagaaccaggtggtgatc
gataatggcattgtccgactcaatctttcttatcccggaggagacgtcattggaatcaat
tacaagggaattaaaaacttgcttgaaaccaagaatgcaatagataatcgagggtactgg
gacgttgtctggaacagagatggaggtaaagatgtggtggacaagctacaaggaactgga
tttagagtcattacagagagggccgaccaaatagagatttcttttactaaaacatataat
gtttcccttggtaatgctacacttcccatgaatgttgacaaaagatacatagtgcaacgt
ggtcgtgatgggttttatgcctacgcaatattcgagcgtcttaaggggtggcccagaact
aatgtggatcaaattagatttgtgtacaaacttcaacaagacaaatttccattcatggct
atatcagacaacagaaaaagagtcatgccaacagccagagaccgtgcaaatggcaagccc
cttgcctaccctgaagctgtccttttaaccaaaacaagcaatcctgaccttcgaggagag
gtagatgacaagtaccaatactcaactgaggacaaagataacaaagttcatggttggatt
tgtaatgaaccgcctgtagggttttggataattacatcaagtgatgagtttcgtacagcc
ggacctttcaaacaagaccttacctctcatgcgggtccaactgtgctctctatgtttgct
agtactcattatggtgggaaggaagttgggatgacattcaaagatggggaggcatggaag
aaggtttttgggcctgtctttgtctatcttaattcagttcgaagctcaaataattccctc
agactctgggaaaatgctaaagaacagatgcttgaagaagtcaaaagatggccttacaat
ttcactcaatctgaagattttccatcatcggataaacgtggatcagttgcgggccagtta
ctaatacaagatcggtacatcaacgagagccttgtatgggcaagttcctcttacgtggga
ttggcagcacctggaaatgtgggatcatggcaaaaggaaagcaagggttatcaattttgg
actcaaactaacaagcaaggttatttcctcattaaagacgttcgacctgggaactatagt
ttgtatgcaacagttcccggcgttgttggggattacaaatatgaaactattattaaaatt
aaaccaagacgtggaattaatctgggcaatataacttacgtacctccaagaaatggtcca
accctgtgggaaattggcatcccagatcgatcagctgccgagttcaatgtacccgatccg
tccccaactcttaggaaccaattatacaccaatcacacggacaagtttaggcaatacggc
ctgtgggatcgctatacagatttataccctaaccatgatctcatctacaccgttggtgct
gacgattaccatgacaagtggttttttgctcatgtgacaaggaacactggaaataatacg
tatgaagcaaccacatggcgaattctatttcaacttaagaatttgactactaccggaaat
tatacactccaattggcattggcctcagccaacaatgcagaagtacaggttcgatttaac
aaccagagcaccaaaccacctcactttacgacaggactaatagggaaggacaatgccata
gcaagacatggaattcatggtttgtactggttgttcagtattattgtaccaagttatcga
ctacaagaaggaaacaacagcatctttcttacacagtcaagaagattgggctccttcgac
ggcgtcatgtatgactatattcgactagaaggacctcctcaatggtga
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