Malus sylvestris (European crab apple): 126621016
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Entry
126621016 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126621016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126621016
03036 Chromosome and associated proteins [BR:
msyl03036
]
126621016
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126621016
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
126621016
mRNA degradation factors
5'-3' decay
Decapping complex
126621016
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
piRNA pathway
126621016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
ABC_tran_Xtn
Motif
Other DBs
NCBI-GeneID:
126621016
NCBI-ProteinID:
XP_050145334
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All DBs
Position
1:complement(13332277..13338855)
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AA seq
508 aa
AA seq
DB search
MNSNRGRYPPGIGAGRGGGMNANPAFQSRPPHQQQYVQRNLLPNHHHQQQYFQQQQQQQQ
HQQHQQQQLQQQQQWLRRGQLGGSTSADSAVDEVEKTVQSEAVDPSSQDWKARLKIPPAD
TRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKN
GTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGT
SLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLMSPEFQPSVEQL
IRFLPSHRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVEERQKVH
CLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNG
ACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDR
FNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtaatagagggaggtacccgccggggatcggagctgggaggggcggcggcatg
aatgcgaaccctgcattccagtcccgtccgccgcatcagcagcagtatgtacagaggaac
cttttgccgaaccatcatcaccagcagcagtactttcagcagcagcagcagcagcagcaa
caccaacagcatcaacagcagcaactacaacagcaacagcagtggctcaggagaggccag
ttgggtgggagtacgagtgctgattcagccgttgatgaggtggaaaagaccgtgcagtcg
gaagctgtcgacccgagttcgcaagattggaaggccaggttaaagattccaccagctgat
acacgtttcagaacagaggatgtaacggcaacaaaaggaaatgagtttgaggactatttt
ctgaaacgtgagctgctgatgggaatatatgagaagggatttgaaagaccatctcctatt
caggaagaaagtattccaattgctttaactggtagtgatattcttgctagagctaaaaat
gggacgggaaagacagctgcattttgcatccctgcattggaaaaaattgatcaagataac
aatgtgatacaagttgttattcttgttccaactcgtgagttggctcttcaaacatcacaa
gtctgtaaggagctagggaagcatttgcaaattcaagttatggttacaaccggaggcacc
agcttaaaggatgatatcatgcgtttatatcaaccagttcacttacttgtcggaactcct
ggaagaattttagatcttgcaaagaaaggtgtttgcatcttgaaggattgttctatgctt
gttatggatgaggctgataaacttatgtcgccggaatttcaaccttcggtagagcagttg
atccgcttcttaccttcacatcgacagattttgatgttttcagctacatttcctgttact
gtcaaggactttaaggatagatatctgcaaaaaccgtatgttatcaatcttatggatgag
cttactctaaagggtattacacaattttacgcctttgtggaggagagacagaaagtccac
tgcctaaacacccttttctctaagcttcaaataaaccagtcaatcatattctgtaactct
gtgaaccgggttgaattgttggccaagaaaattacagaacttggctattcttgtttctat
atccatgcaaagatgctgcaagaccatcgtaacagagtatttcatgacttccgtaatggt
gcatgcagaaatcttgtttgtaccgatctctttacaagaggaatagatattcaagcagtt
aatgttgtcattaactttgattttccgaagaactcagagacatatcttcacagggttggt
cgatctggaaggtttggacaccttggtttagctgtgaatttgatcacctatgaggaccgt
ttcaacttgtatagaattgagcaagaacttggcactgagataaagcaaattcctccccat
attgatcaggcaatttattgccggtga
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