Malus sylvestris (European crab apple): 126621131
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Entry
126621131 CDS
T09027
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126621131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126621131
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126621131
mRNA degradation factors
5'-3' decay
Decapping complex
126621131
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
126621131
NCBI-ProteinID:
XP_050145474
LinkDB
All DBs
Position
5:complement(34432345..34444044)
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AA seq
820 aa
AA seq
DB search
MEGFESRGSIQEAASSIPQDLNQLQLNSSGEVFDASQYAFFGKDSVEEVELGGLDEEEAP
VGFDEEEFLYNRQEVDISLSDIDDLSLTFEKLNKDVSGTRSAGVIGDRGSRESSSAAEWA
QEHFPNWIDEEILDAESTQDGKRWSSHPYSSARPAESMPLYRTSSYPEPQQQQLQQQHQH
FSSEPILVPKSAFTSYPPPGGRPQQASPNRQASHLNPYLSGGPQGGLSSPNLSPYTSSQL
QLNGLPHVSHFGGNLPQLNPGLSNSRPQKQWANQSGVYGDHPGLMNNLLQQQLAHQNGLV
PPQLMHQQQSQPQDPRLHHPVQPSFANLSVMQSQLFNPHLSASPPLVSKFEAMLGMGDLG
DQRPKSAQKVRPNMRFSQYGFDTGSHRREGGWPQFRSKYMTADEIENILRMQLAATHSND
PYVDDYYHQFCLSRKSAGAKLKHHFCPTQLRDLPPRARANTEPHAFLQVDALGRVPFSSI
RRPRPLLEVEPPNSYSPGNTEQKVFEKPLEQEPMLAARVAIEDGLCLLLDVDDIDRFLQF
NQLQDGGTQVRRRRQALLEGLAGSLQLVDPLGNNGPTVGLHKDDLVFLRLVSLPKGRKLL
AKYLQLLFPGGELMRIVCMAIFRHLRFLFGSYPSDPLAAETTNILARVVSSCARGMDLGA
LSACLAAVVCSSKQPPLRPLGSPAGDGASLILNSVLERATELLTDPHAASNYNMTNRQLW
QASFDEFFGLLTKYCVNKYETVMQSLLMQAPPNVAIIGSDAARAIGREMPVELLRASLPH
TDEHQRQLLLDFTQRSMPIGSSSSGDGGNGSHMNSESVLS
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtttgaaagtaggggtagtattcaagaggctgcctcttctatcccgcaagat
ctcaaccaattgcagcttaattcctcaggagaggtattcgacgcatcacagtatgcattt
tttggtaaagattctgttgaggaagttgaattgggaggtttagatgaagaggaggctcca
gttgggtttgatgaggaggagtttctgtataatagacaagaggttgacatatctctatct
gatattgatgacctatcattaacctttgaaaagttaaacaaggatgttagtggaactagg
agtgctggagtaattggtgatagaggatccagagaaagttcatctgctgctgagtgggcg
caggagcattttcctaactggattgatgaagagatacttgatgctgaaagcactcaggat
gggaaacgatggtcttcacacccatattcttcagctcgtccagcagagtcgatgcctttg
tatagaacttcttcatatcctgagccccaacaacagcagctgcagcagcagcatcaacat
ttttccagtgaaccaattctggtgccgaaatcagctttcacttcttatccacctccaggt
ggcagacctcagcaggcttcgccaaaccgccaagcaagccacctgaacccatatctttct
ggtgggccccagggggggttgtcttcaccaaacctatctccttacactagctctcaactt
caactgaatggattacctcatgtatcgcattttggtggaaatttgcctcagcttaaccct
ggtctctctaatagccgaccccaaaagcaatgggccaatcaaagtggtgtttatggagat
catccgggtcttatgaacaatttgttgcaacaacagctagctcatcagaatggtttagtg
cctccacaattgatgcatcagcaacagtcacaaccacaggatcctagactgcatcatcca
gttcagccatcatttgctaatttgtcggtaatgcagtctcaactgtttaacccccatctt
tctgcatccccgcccttggtgagcaagtttgaagcaatgcttggtatgggtgatcttgga
gatcaaaggccaaaatcagctcagaaagttagaccgaatatgcgtttttctcaatatgga
tttgatacaggtagccacaggagggaaggtgggtggccacaatttaggtccaagtatatg
acagctgatgaaattgaaaatatactccgaatgcagctagctgcaacacacagcaatgac
ccatatgtcgatgattactaccaccagttttgcctttcaagaaaatctgctggggccaag
ttgaaacaccatttctgcccaactcaattaagggatcttcctcctcgagcacgagctaat
actgaaccacatgcttttctccaggttgatgctcttgggagagtccccttctcctcaata
cggaggcctcgccctcttcttgaagttgagcctccaaattcatatagccctggcaacact
gaacaaaaggtttttgagaagccgctagagcaggagccaatgcttgctgctagggttgca
attgaggatgggctttgtcttctcctggatgtggatgacattgatcgttttctacaattc
aatcaactccaagatggtggaacccaagtgaggcgtcggcggcaggccttgcttgaagga
cttgcaggatctcttcaattagttgacccacttggcaacaatggccccacggttgggctt
cataaggatgatcttgtatttctaaggttagtctcacttcccaagggccggaagctcctg
gcaaagtacctgcagcttttatttcccggtggtgagctcatgcgaatagtctgtatggcc
atctttcgtcatttaaggttcttgtttggtagctacccttctgatccattggctgcagaa
actacaaatattcttgcaagggttgtttcatcatgtgctcgaggtatggaccttggtgca
cttagtgcctgtcttgcagcagtggtttgttcctcaaagcaacccccgcttcgccccctt
ggaagccctgcaggagatggggcctctcttatcctcaattcagttcttgagagggcaact
gaactcttaactgatcctcatgctgcaagcaactacaatatgaccaatcggcaactttgg
caggcctcctttgatgaattctttggccttctgaccaagtactgtgtaaataaatatgaa
actgtaatgcagtcactgctaatgcaggcccctccgaatgtggctattattggctcagat
gcagccagagcaattggtcgtgaaatgccagttgaactgttgcgtgcgagccttcctcac
actgatgagcatcagaggcagctgttgttggacttcacgcagcggtctatgcccatagga
tcatctagcagtggtgatgggggaaatggttctcacatgaattcagagtctgtgctgagt
tga
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