KEGG   Malus sylvestris (European crab apple): 126621385
Entry
126621385         CDS       T09027                                 
Name
(RefSeq) histone deacetylase 19 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03082  ATP-dependent chromatin remodeling
msyl03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    126621385
   03083 Polycomb repressive complex
    126621385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:msyl03036]
    126621385
Enzymes [BR:msyl01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     126621385
Chromosome and associated proteins [BR:msyl03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     126621385
   HDAC complexes
    Sin3A-HDAC complex
     126621385
    BRAF-HDAC complex
     126621385
    REST complex
     126621385
    SHIP complex
     126621385
    MiDAC complex
     126621385
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     126621385
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    126621385
  Chromatin remodeling factors
   NuRD complex
    126621385
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 126621385
NCBI-ProteinID: XP_050145835
LinkDB
Position
5:26779155..26872167
AA seq 498 aa
MDTGGNSLVSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMQ
VLKPYPARDRDLCRFHADDYVAFLRNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHGICDISINWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGI
DDESYHYLFKPIIGKVMEIFKPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGAEIEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSHMLLEEIRSKLLENLSRLQHAPSVPFQERPPDTELPEENEEQDDPDERWDPDSDMEV
DDERKPLPSRVKKEIVEPEVKDPIQKGTSENARSSGYDPAVDEITTGAKALDMGSGSVDE
PTTVKVEQDTMNKPADQI
NT seq 1497 nt   +upstreamnt  +downstreamnt
atggacaccggcggcaactctctagtgtcgggtcccgacggagtgaagaggaaggtgagc
tatttctacgacccagaagtgggaaattactattatgggcagggacacccaatgaagccc
caccggattcggatgacccacgccctcctcgcgcactatggcctcctccagaacatgcag
gtcctcaaaccctacccggcccgcgaccgcgacctctgccgcttccacgccgacgattac
gtggcgttcctccggaacatcacccccgaaacgcagcaggaccagctgcggcagctcaag
cggttcaatgtcggcgaggactgccctgtctttgatgggttgtactcgttttgccagacc
tatgctggtgggtcggtcggcggcgctgtgaagctcaaccatgggatttgtgatatttct
attaattgggctggtggtttgcaccatgctaagaagtgtgaggcttctggattttgctat
gtgaatgacattgttcttgcaattttggaacttcttaagcagcatgagcgcgttttgtat
gtggacattgatatccaccatggagatggtgttgaggaggcgttttacacgactgacagg
gtcatgacggtttcatttcacaagtttggtgattattttcctggcacgggggacattcgt
gatattggttacgggaaagggaagtattactcccttaatgttccattggatgatgggatt
gatgatgagagctaccattacttgttcaagcccatcattgggaaggtgatggaaattttt
aagcctggggctgtggttctccagtgtggtgctgattccttatctggggacaggcttggt
tgcttcaatctttccatcaaaggccacgccgagtgtgttaggtatatgagatccttcaat
gtcccactcttgcttctaggtggcggtggctataccattcgcaatgttgctcgttgttgg
tgctacgagactggagtagcacttggagcagaaattgaggacaaaatgccacagcacgag
tattatgagtatttcggtccagattatactcttcatgttgccccaagtaatatggaaaat
aagaattctcacatgttactagaagaaatacggtcaaagcttcttgaaaacctctccagg
ctgcagcatgcacccagtgtcccgtttcaggaaagacctcctgatactgagcttccggag
gagaatgaggaacaggatgacccagacgagaggtgggatccagattctgatatggaggtt
gatgatgaacgtaagcctttaccaagcagagtaaagaaagagatcgttgaacctgaagtt
aaggatccgatccagaaagggacctcggagaacgctagaagctcaggctatgatccagcg
gtagatgagataacaacaggcgcaaaggctttggatatgggatctggatcagtggatgaa
ccaacaactgtgaaagttgaacaagacactatgaataagcctgcagaccagatataa

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