Malus sylvestris (European crab apple): 126621628
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Entry
126621628 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126621628 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126621628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126621628
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
126621628
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
126621628
NCBI-ProteinID:
XP_050146122
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Position
5:23118821..23137092
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AA seq
1963 aa
AA seq
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MASPKSIDASLWWDSFSLLLTELENASLSSDLPPILVKKLTDNHAWFVDTVSRFKPPNEN
SREALNSQQVKIGSHQLNIKPELKDKALKVSSYLCLDEVQSYILVERSLENKDVALDSIL
HEYFYAVIIHYYVERQCLLKCTRSILTHALSLESVSGDGNAIKKEALKLITDGLEAKLIN
VLQVLFSSSHPEQMDLDLFTLWAEETLIEDNLVLDILFLAYYESFCTCNGERWKTLCLLY
KGTLSGSYNFENLAVSTEALRSSYQTKVQLLLILIETLDLESLLQMVHDAIPFRQGTFVF
TLADVQEMEAIISTFNAFETKEAGPLILAWAVFLCLISSLPGSEESNVLMEIDHVGYVRQ
AFEAASLTYCVEILQSDVLKESDGPADGYHSVLRTFISAFIASYEINLQLEDKSLKLILD
ILCKIYQGEESLCIQFWDRESFIDGPIRCLLCNLEGEFPFRTVELVRFLSSLCEGTWPAE
CVYNFLDKSVGISSLVEINNGSVGEDMSQIVETHLPLHVPGFEGLVIPSKTCGHVLRLVS
GNAALVRWEYKQSGVLVLLMRLSQELYFDRNDEALLILDLFRRMVTFNTAVCFALMDIGS
SSHFQSTDMGGQIESNMRLVEIICTLVRKLSPTSGGAALMSVGINILAKMLRCSPSRVSE
LALKANIFDFSNGRNDPSSGSWFLSGKLAKMLLIDSEQNDSYCSLTISVLDFTLGLMETG
LKNDAVQDLIVFSVQYVLVNHEYWKYKVKHDRWRVTLKVLEVMKKCITSISCSGKLDEAI
LDRLLSDSSIHSTLFRIVCTTTQALERLYFSRLVDPTEIEGLQMAICSVLDILFIMLSKF
SKDISSSPPFFHQAVFSSATKPFPVVAALVSLISYFRNPGIQVGAARVLSLFLMMADFMQ
PYLFGSSFGLDDKQIGELRHSISYILLEQSELNEDLFVAAVNLLTSAARYQPAFLVAVLP
TKANKDVQLSNGGGVKLPTNDFESEKASAVHAVLHHIERSNNLINSNPRILLNVLNFLRA
LWQGAGQYTNILECLKSSENFWKKLSGPISIFSSMQAPPPENAETEVEDLSVRYQCQSAI
LEIIAHDMFLHKKLLHAESFVKQLPESQQNTVRSEKSKAADLEDILSAWCGSSVLGNLTK
SLTYCEYDPELYLRAKVAASVITARVMVNLSIGDAGSLSVSLLEKSRILSNKLRSHPAFS
ELLAQYSQHGYSAGKEPNYLILSDLYYHLQGELEGREISAGPFKELSRFLIESNVFQTYQ
HKDDGDLFVTGRETYLFDLKRVRADLGLDLWDYSKWKESKATAETMLHHMKAANSMALLT
SSKLSALKALKSVLTVYGDNSLETKSTARQIPDQLVFSCIDHVCQSFHDTVESLAPVPGA
SEDVFHFLAAQAELLLYLMMYAHKSLPLSVCILVLKTSGSGLKALSDFRALVTGPSDMGV
DTAVRLLLMLLLSAVEFSCHKSHLVGARDVASVEDVAKISNVSLSLLPVLCNCTATAEHG
TLSLTTTDLILRNFLTPSTWLPIIQNHLQLQRVILKLQDKDSLESVPVIMKFFLTLARVR
QGAEMLINYGFLSSLRFLFAEYLDGMSSSVTIDNRNSNSSSEKLEKPQQIWGLGLAVITA
MVQSLGDSSACSDLVENVIPYFFSEKAYMISYYLSAPDFPSNDHDKTRPRAQQRQTSLSD
LKETEHTLMLMCMLAKHWNSWVKCMKELDSQLREKSIHLLAFISRGTQRLGEPSTLSAPL
LCPPVLKEDFDGCKKPSFINSKSGWFALSALSCVSKPKFSSIPTTSTALIMKTQASVNGN
HISQSYFSDSIAVQIYRITFLLLKFLSLQAEGAARRAEEVGFVDLDHFPELPTPEILHGL
QDQAITIVTELCEANRSNEIQIEVQSICCLLVQIMEMALHLELCVLQIYGIRPVLGRVED
FSKEVKLLIKATKRHAFLKPSVKSLKQIVSVIYPGLLQADEFL
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atggcgagccctaagtccatcgacgcctcgctctggtgggactctttctctctcttactc
actgagctcgaaaatgcctctctctcctccgacctccctcccattctggtaaagaaatta
acggacaatcacgcttggttcgtggacacagtgtctcgcttcaagccgcccaatgagaat
tcgagggaggctttgaattcacagcaagtgaaaattgggtctcaccagttgaatataaag
cctgagttgaaagataaagctttgaaagtcagctcctatttgtgtctagatgaggtgcaa
tcgtacattcttgttgaaaggtctctcgagaacaaagatgtagctcttgactctatactg
cacgagtatttctatgcggtgattattcactattatgttgaacggcagtgcctgctgaag
tgcaccaggagtattctcacacatgctttgtctttggaaagcgtctctggagatggtaat
gctattaagaaggaagcactaaagttgattactgacggattggaggcgaagctgataaat
gtgctgcaagtccttttctcctccagtcacccggaacaaatggatcttgaccttttcact
ttgtgggccgaggagacactaattgaagacaatttggttttggacattcttttccttgct
tattatgagtcattttgtacttgtaatggtgaaaggtggaaaactttgtgtttgctctat
aagggaactttatctgggtcctataactttgaaaatctggcagtatcaactgaagcgcta
cgttcttcttatcaaaccaaagtccagctgcttctcatccttatagaaaccctggacctg
gaaagtcttctccagatggttcacgatgcaatccctttcaggcagggcacatttgttttt
actttggctgatgtccaagagatggaagcgataatttcaacattcaatgcttttgaaaca
aaagaagcaggtccattaattctagcctgggctgtttttctttgtctgatttcatcactt
ccaggtagtgaagagagcaatgtactaatggaaattgatcatgttggttatgttcgtcaa
gcgttcgaggctgcatctttgacttattgtgttgaaatccttcaaagtgatgtattgaaa
gaatcagatgggcctgctgatgggtatcacagtgtgttgagaacttttatatctgcattt
attgcatcttatgagatcaatcttcagctggaagataaatctctgaagttaatactggat
attctttgcaaaatttatcagggagaggagtcactttgtatccagttttgggatcgtgag
agttttattgatggccctatccgttgtcttctttgcaacttagagggtgaatttcctttc
aggacagtggaactagttcgctttttatcatcactttgtgaaggaacttggcctgcagaa
tgtgtgtataactttttggataagtctgtgggtatttcatcccttgttgagattaataat
ggctccgttggggaggacatgtctcaaattgttgagacgcacctccctctgcatgttcct
ggatttgaaggtctggttattcccagtaaaacttgtggacatgttttaagattagttagt
ggaaatgccgctcttgtacgatgggagtataaacagtctggggtgctagtattgctcatg
cgcctgtcccaggagctgtattttgacagaaatgacgaggctcttcttatccttgaccta
tttaggcggatggttacctttaacacagcggtatgttttgctttgatggacattgggagc
tcatcgcatttccaatcaactgacatgggtggacagatagaaagtaatatgcggttggtt
gagatcatttgcactttggtcagaaaactatctcctacttcgggcggtgctgctctgatg
tccgtgggtataaatattttggcaaagatgttaagatgttccccttctcgtgtgtccgag
ctggctttaaaggcaaatatatttgatttcagcaatggccgcaatgatccatcaagtggt
tcatggtttctttctggaaaactggcaaagatgctattaattgactctgagcagaatgat
agttactgctcattgactatatcagtgctggactttactctaggtctcatggagacagga
ttaaaaaatgatgctgtccaggatttaattgttttctctgttcagtatgttcttgttaac
catgaatactggaaatacaaggtgaagcatgatcgttggagagtaacattgaaggtgctt
gaagtgatgaaaaaatgtattacatcaatatcatgctctggaaagttggatgaagccatc
ctggataggttactgtctgattcttccatccatagtactctctttcggattgtttgtaca
accacccaagcgctggagagactttatttcagccggcttgttgatccaacagagattgaa
ggcttacagatggctatatgttctgttttagatattcttttcatcatgctttctaaattt
tctaaggatatatcttccagtcctccattttttcatcaagcagttttctcatcagcaacg
aaaccatttcctgttgttgcagcgcttgtgtccttgatatcttactttcgcaatcctgga
atacaagttggtgcagctagggttttatcactgttcttgatgatggccgattttatgcaa
ccatatttgtttggtagcagcttcggtctggatgacaaacagattggagagctgaggcat
tctattagttacatactacttgagcagtcggaattgaatgaagatctctttgttgctgca
gtcaatctcctcacttctgcagcgcgttatcagcctgcttttcttgttgctgtattacca
accaaagcgaataaggatgtccaactgagtaatggtggcggtgtgaagctgccaacaaat
gattttgagtctgaaaaggcaagcgctgttcatgcagttttgcatcacattgaaagatct
aataatcttatcaacagcaatccccgaatactgctgaatgttcttaactttctaagggcg
ctgtggcaaggtgctggtcagtacacgaatattttggaatgcctgaaaagctctgaaaat
ttctggaaaaaattgtccggtcctatttcgatattttctagtatgcaagctcctccacct
gaaaatgctgagacagaagttgaagatttgtcggtcagataccagtgccaatctgccata
ttggaaataatagcgcatgacatgttcctgcacaaaaagctgttacatgcggagtcattt
gtaaaacagctgcctgaatcacaacaaaatacagtaagatcagaaaaatcaaaagctgca
gatcttgaagatattttatcagcctggtgtgggagctctgttttgggcaatctgactaag
tcacttacctattgtgagtatgaccctgagttgtatttgcgggcgaaggttgctgcgagt
gtaataactgctcgtgtgatggtaaacttatcaattggtgatgcaggaagtttgtctgtg
tcattacttgagaagtctagaatcctgtcaaataagctgagaagtcatcctgctttttct
gaattgttagctcaatactcacagcatggttacagtgcagggaaggaaccaaactatttg
atacttagtgatctctattatcatctgcaaggagagcttgaaggccgtgaaatcagtgct
ggaccattcaaagaactctctcggttcctgattgaatcaaatgtttttcagacttaccaa
cacaaggatgatggtgatctttttgtaaccggaagagagacatacttgtttgatcttaaa
cgtgtacgtgctgatttggggttagatctttgggattattcaaaatggaaggagtcaaag
gcaactgcagaaacaatgttgcatcatatgaaagctgcaaactcaatggcattgctaaca
agttcgaagctttctgcactgaaagcattaaaaagtgtcttaactgtttacggtgataat
tcgctggagacgaagagtacagcgagacaaatccctgatcaacttgttttttcgtgcata
gatcacgtatgccagagtttccacgacacagtagaatcattagctccagtacctggtgct
tctgaagatgtcttccacttccttgcggctcaagcagaattgcttctctatctaatgatg
tatgcacataaaagcctgcctctgtctgtttgcattcttgtactaaaaacatcaggttct
ggccttaaagcgttgagtgatttcagagcattagttacggggccatcagatatgggggtt
gacactgcagtaaggctcttacttatgttgcttctctcggcggtggagttcagttgtcat
aagtcgcatttggttggggcaagagatgtagcttctgtcgaagatgtggctaaaatatct
aatgtgagtcttagtctactaccagttctctgtaactgtactgctactgctgagcacgga
accctatccctaactactacggacttgatacttagaaatttcttgactcccagcacttgg
ctccccattatacagaatcacctccagcttcagcgcgtgattctgaagcttcaagataaa
gattctcttgaatctgtgcctgttataatgaagttctttttgactcttgcccgtgttagg
cagggtgcagaaatgcttattaattatggctttctctcgtctctgagattcttgttcgct
gaatacttggatggtatgtcttcttccgtaactattgataacagaaattccaactcatca
tctgagaaactggaaaagcctcagcaaatttggggacttggtttggcagtcatcacagct
atggttcagtcgttaggagacagttctgcttgttccgatcttgtggagaatgtaatacct
tacttcttttcagagaaagcctatatgatttcttactatcttagtgctccggatttccca
tctaatgatcatgacaagaccagacctcgggctcagcagagacaaacttctctttctgat
cttaaagaaactgagcacactctcatgctaatgtgtatgctagcaaaacattggaattcc
tgggttaagtgcatgaaagaattggattctcagttgagagagaaaagtatccatctttta
gcttttatcagtcggggaactcaacggcttggagaaccttcgactcttagtgcccctctc
ttatgtcctcctgtccttaaagaggattttgatggctgcaagaaaccctcatttatcaac
agtaaaagcggatggtttgctctttcagccctcagttgtgtgtcaaaaccaaaattctcg
tccatccctaccacatctactgctctgattatgaaaactcaagcatctgtaaatggcaat
cacatttctcaatcatacttctccgactctattgccgtacagatctacagaataactttt
ctccttctaaagttcctcagcttacaagctgagggtgctgctagaagggcagaagaggtt
ggctttgttgatcttgaccattttcctgagcttccaacgcctgagatcttacatggctta
caggaccaagcaattacaattgttacggagctgtgtgaggctaacagatcaaacgagatt
caaatcgaagtccagagtatctgttgcttactggtacaaataatggagatggccttgcac
ttggaactctgtgttctacagatatatggcataagacctgtattaggccgtgtggaggat
ttttcaaaggaagttaaactgttaataaaagcgacaaagagacacgctttcctcaaacca
tctgtgaagtccttgaaacagatcgtatcagtcatttatccaggactgttacaggccgat
gagtttctgtga
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