Malus sylvestris (European crab apple): 126621933
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Entry
126621933 CDS
T09027
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126621933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126621933
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126621933
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126621933
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126621933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
Torus
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
126621933
NCBI-ProteinID:
XP_050146510
LinkDB
All DBs
Position
5:39905188..39911460
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AA seq
671 aa
AA seq
DB search
MEDSDGVLNFDFEGGLDAAATVSATAGPANTGPASNYSVMQSDSAVTGAGGAGSNQAAVA
QQPNQNANRMGGRSYRQTVCRHWLRSLCMKGEACGFLHQYDKSRMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLNSYNYNNS
NKFYQQRNAGFPQQGEKYQPAQGPNNFVGKPTTAESGNVQQQQQLQQTQQQVGPAQTQNL
PSGLANQANRSALPLPQGTSRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAE
NVILIFSVNRTRHFQGCAKMMSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHK
TRHLRNPYNENLPVKISRDCQELEQSVGEQLASLLYLEPDSELMAISIAAESKREEEKAK
GVNPENGGENPDIVPFEDNEEEEEEESEDEEDSFGQVPGAGNDGRGRGRGGVMWPPHMPL
PRGGRPMPGMQGFPPGMMGPDAMPYGPDGFVMPNPFGMGPRGFNPYGPRFSGDFTVPNPG
MMFRGRPQQPGFPPGGFGIMGPGRAPFMGGPHPGRGGRPTGISPMFPPPPPLLSQNPNWM
PKRDPRGASSDRRGQDMTGSAGGPDDEALYGAGNNSRNDDSDSEDEAPRRSRHGEGKKKR
RDSEGDATSEH
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaggactcggacggagtcctcaacttcgacttcgagggcggcctcgatgccgccgcc
accgtctcggccactgcgggccccgccaacacgggcccagcatctaattattccgtgatg
caatcagactccgccgtcaccggggccggcggggcgggctccaaccaggctgctgtggcg
cagcagcccaatcagaatgcgaaccggatgggtgggcggagctatcgccagacggtgtgt
cgtcactggctgcgcagcctttgtatgaagggcgaggcctgtgggttcctccaccaatac
gacaagtcgcgcatgcccgtgtgccgcttcttccggttgtatggtgagtgccgcgagcag
gactgcgtgtacaagcacactaacgaggacatcaaagagtgcaatatgtacaagttgggt
ttttgtccaaatggtcctgattgccggtatagacacgcaaagctgccgggacctccacct
ccagtggaagaagtccttcagaagatccagcatttgaattcttacaattacaacaactca
aataagttctatcaacaaaggaatgctggttttccccaacaaggagagaaataccaacct
gcacaaggacccaacaattttgtgggaaaacctactacagcagagtctgggaatgttcag
cagcagcaacagcttcaacaaacccaacaacaggttggccccgcacagacacaaaatctt
ccttctggcctagctaatcaggcaaatagaagtgcgttgcctttgcctcaaggaacatct
aggtattttattgttaaaagttgcaaccgtgaaaatttggaattatctgtacaacaagga
gtatgggcaacccaaaggagcaatgaatccaaacttaatgaagcttttgactctgctgaa
aatgtgattttaattttctcagtcaaccggactcgacatttccagggttgtgcaaagatg
atgtccagaattggtgggtcagttggtggagggaactggaaatatgcacacggaactgcg
cattacgggcgaaatttctctgtcaaatggttaaagctatgtgaactgtcctttcacaaa
actcgtcatttgaggaatccctacaatgagaacctaccagtgaagataagtagagattgt
caagagctagagcaatccgtcggtgagcagttggcttccttgctttatcttgagccagat
agtgaacttatggcaatttcaattgcggcagaatcaaaacgtgaagaagaaaaagcaaag
ggagtcaatccagagaatggtggtgagaatccagacattgtcccatttgaggacaatgaa
gaggaggaagaggaagaaagtgaagatgaggaagatagcttcggtcaggttcccggagca
ggaaatgatggcagaggaaggggcaggggaggagtcatgtggccacctcacatgcctcta
ccaagaggtggcagacctatgcccgggatgcaaggttttcccccaggaatgatgggtcct
gatgcaatgccttatggccctgacggatttgttatgccaaatccttttggtatgggccct
cggggtttcaatccgtatggtcccaggttttcaggtgactttacagtgcccaaccctggc
atgatgttccgtggacggccacaacaacctgggtttccacctggtgggtttgggattatg
ggtcctggacgagcaccatttatgggaggcccccatccaggccgaggtggtcggccaact
ggtatatctccaatgtttccaccacccccgccactattatctcaaaaccctaactggatg
ccgaagagagatccaaggggagcttccagtgatcggagaggacaagatatgacaggttcg
gctgggggaccagatgatgaggcactttatggtgctggaaacaactctagaaatgatgac
agtgacagtgaggatgaggccccgaggcggtcgaggcatggagagggaaagaagaaacgg
cgagactcggaaggagatgcgacctccgagcactag
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