Malus sylvestris (European crab apple): 126622176
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Entry
126622176 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 51-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126622176
03009 Ribosome biogenesis [BR:
msyl03009
]
126622176
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126622176
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126622176
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
Helicases
126622176
Pre-60S particles
126622176
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SLFN-g3_helicase
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
126622176
NCBI-ProteinID:
XP_050146809
LinkDB
All DBs
Position
5:30122163..30126918
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AA seq
577 aa
AA seq
DB search
MEGAMVARRNNRKRKRAKKLSESTGTIEESEPQNRKEDQEEEDKGEDEKTKRMKVEETAG
KEENEGVEASKEEKKTKVKRGGGSGIMTTESFGSLNLSSNTFKAVQDMKFQHMTQIQART
IPPLLIGKDVLGAARTGSGKTLAFLVPAVELLYHTKFTPRNGTAVVVICPTRELAIQTHA
VAEHLLKYHSQTVDLVIGGANRRREAESLVKGVNLLVATPGRLLDHLQNTKGFLYKNLKC
LIIDEADRILEDNFEEEMRQIIKRLPQERQTALFSATQTKKVEDLARLSLKDPFLIDVDE
GRTKVTNEGLKQGYVIVPSDKRFILLYTFLKTTRSKKVMVFFSSCNSVKFHSELLKYINM
ECFDIHGKQKQQKRTKTFFDFCKAEKGILLCTDVAARGLDIPAVDLIVQFDPPDDPKEYI
HRVGRTARGEGGKGKAFLLLIPEEMQFIRYLMDEKVPVEEHKYKESMLKNVQSQLVEMVQ
RNDYLRKSAKEAYKSYLLAYNSHSMKDIFNVHRLDLQAVAASFCFLSPPKMNLNLNSNAS
KFRKKMSKVKGSRNGFSVSNPYGRQKGRDEIRQFVRH
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atggaaggcgcaatggttgctcggaggaacaaccggaagagaaagagagcgaagaaactg
tcggaatcgaccggtacgattgaagaatcagagcctcaaaaccgtaaggaggaccaagaa
gaagaagacaaaggggaagatgagaagacgaagagaatgaaggtagaggaaacagcggga
aaagaggaaaatgaaggtgtagaagcctcgaaggaagagaagaagacgaaggttaagaga
ggtggagggtctgggattatgaccacagagtcttttggatcactgaatttgtcttccaac
acttttaaggccgttcaagatatgaaatttcagcacatgactcagattcaagccagaaca
atcccaccactattgatcggaaaagatgtactgggagctgcaaggacaggatctgggaaa
actcttgcttttctagtaccagctgtggagttgctatatcacacaaagtttactcctcgt
aatggaaccgctgttgttgtcatttgccctacacgggagcttgcgattcagacccacgct
gtggcagagcacctcctcaagtatcactcacagactgtcgacttggttattggtggtgca
aatcggagaagagaagcagaaagtcttgtaaaaggagtaaatctattggttgcaacccct
ggccgacttcttgaccatctccagaataccaagggatttctatataagaacttgaagtgc
ctcatcattgatgaagccgacaggattttggaagataactttgaagaagaaatgcgacag
attatcaaacgtctaccccaggaaaggcagacagctttattttcagcaacccaaaccaag
aaggttgaagatcttgctagattgtcactgaaagatccttttttgattgatgtggatgaa
gggaggactaaggtcactaatgaagggctaaaacaaggctatgttattgtgcccagcgat
aagagatttattctcctatatacttttctgaagaccactcgttctaagaaagtgatggtc
ttcttctcttcttgtaactcagttaaattccactctgaacttcttaaatacattaatatg
gagtgctttgatatccatggaaagcaaaagcaacagaagaggacaaaaactttctttgac
ttctgcaaagcagagaaaggaatcttactttgtactgatgttgctgctcgtgggctggat
attcctgccgtggacttgattgtgcagtttgatcctccagatgatcccaaggaatatatc
caccgtgttggtcgaacagctcgaggagaaggtggaaaaggaaaggcattccttctcctc
attcctgaagagatgcagtttattcgctatttgatggatgaaaaggtccccgttgaagaa
cataaatacaaggagagtatgctgaaaaatgtgcagtcgcaactggtggagatggttcag
cgcaacgattatctccgcaaatcagcaaaagaggcatataaatcttatctattagcgtat
aattcacactctatgaaggacatctttaacgtccaccgactcgatctgcaggcggttgca
gcttcattttgctttctgagtccccccaagatgaatctgaacttaaacagcaacgcttca
aagttcaggaagaagatgagcaaagtaaaaggaagtcgaaacggattcagcgtgagcaat
ccttacggtaggcaaaaaggccgagatgaaattcgacaatttgtaagacattag
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