Malus sylvestris (European crab apple): 126622355
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Entry
126622355 CDS
T09027
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03020
RNA polymerase
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126622355
09124 Replication and repair
03420 Nucleotide excision repair
126622355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126622355
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126622355
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126622355
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126622355
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126622355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
126622355
NCBI-ProteinID:
XP_050147019
LinkDB
All DBs
Position
5:43374759..43381648
Genome browser
AA seq
1193 aa
AA seq
DB search
MEEEHEYDDQQYMDDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQPDFAETVCKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVSKRMIKKGHDGEELTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS
TMFVRMLARTSSKGGSSGQYIKATLPYIKGEIPIIIVFRALGFVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGANVGVSRDKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRNLFRKLTKDV
RAYAQKCVDNGKDLNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVRTLRKLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEDAGWHDL
VAKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAISCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAPGQATSRYTRRDHS
ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKNQKKKGA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagcacgagtacgacgatcagcagtacatggacgacgacgatgaagatgaa
atcacgcaggaggacgcgtgggccgtcatctccgcctacttcgaggagaagggcttggtg
cgccagcagctcgactcgttcgacgagttcattcagaacacaatgcaggagattgtcgat
gaatcggccgatatcgagattcggcccgagtcgcagcacaacccggggcaccagcccgat
ttcgccgagactgtatgcaagattagctttggtcagatttatttgagtaagcctatgatg
accgaatccgatggagaaactgcaaccttatttcccaaagctgcaaggcttagaaatctg
acgtactcagcacccttgtatgttgatgtctcaaagaggatgataaagaaagggcacgat
ggcgaagaactcactgagacccaggatttcaccaaagtattcattgggaaggttcctata
atgcttcggtctagttattgcacgctgtaccagaattcggagaaagatttaactgagctg
ggagagtgtccatacgatcaaggtggatattttattataaatgggagtgaaaaggttctt
attgctcaagagaagatgagcaccaaccatgtctatgtgttcaagaagaggcagcctaac
aagtacgcctatgtggctgaagttcggtctatggcggagtctcaaaacaggccgcccagt
accatgtttgttcggatgcttgctcggactagttctaaagggggttcttcgggacagtac
atcaaagctactcttccgtatattaaaggtgaaattcctattattattgtgttccgggct
ctcgggtttgttgcggataaagacatcctagagcacatatgttatgacttctctgatact
caaatgatggagctgcttagaccttctctggaagaagcatttgtgattcagaatcaacag
gttgcactagattatattggaaagagaggtgcaaatgttggtgtaagtagagacaagaga
atcaagtatgcgaaagagattctacaaaaggaaatgcttccacacgttggtgttggagaa
ttttgtgagacaaagaaagcttattattttggatatatcgtccacaggcttctactatgt
gccctaggacggaggccagaagatgacagggatcattatggcaacaagaggcttgatctt
gctggtcccttactcggaggcttgtttcgaaatctattcaggaagttgactaaggatgtg
agagcttatgcacagaagtgtgttgacaatggaaaggatcttaatctgcaatttgccatc
aaagctaaaaccattacgagtggcctcaaatattcacttgccactggaaactgggggcaa
gcaaatgcagctggtacaagggctggagtgtcgcaggtgttaaatcgtttgacatacgca
tccaccctctcacatttgagaagactgaattctccaatagggcgtgaagggaaattggct
aaaccgcgtcagctgcataattcgcaatggggaatgatgtgcccagctgaaacacctgaa
gggcaagcgtgcgggcttgtaaagaatcttgcattgatggtatacataacggtaggatca
gctgcatatccaatcttggaatttttggaagaatggggtacagaaaactttgaggaaatt
tctcctgcggttataccccaagctacaaaaatttttgttaacggctgttgggttggaatc
catcgtgatcctgaaatgttggtgaggacattgagaaagctaaggcgacgggttgatgtc
aacactgaagttggggttgtgagagatatccgtctgaaagaattgcggatatatactgac
tatggacgttgcagtcgtccattattcattgtggataaacagaggcttctcataaagaag
agggatattcatgcattgcagcagagggaaagccctgaagatgctggttggcatgacctt
gtagcaaagggatatattgaatatattgacactgaagaagaggagactacaatgatttcc
atgacaattaatgatcttgtccaagcaagactcaatcctgaggaggcatattcggacact
tatactcattgtgaaatccacccatcacttattttgggtgtttgtgcttctattataccg
tttcccgatcataatcagtctccacgtaatacatatcaatctgctatggggaagcaagct
atggggatttatgtcaccaattatcagttccggatggatacattggcgtatgttttatac
taccctcagaaacctcttgtcaccacaagagccatggagcatctccacttcaggcagctt
cccgccggcatcaatgctattgttgccatctcctgttattctggttataaccaggaagat
tctgtcattatgaatcaatcctctgtggaccgtggattcttccggtcactattcttccga
tcttatagggacgaggagaaaaagatggggacccttgtcaaagaggattttgggcgtcct
gacagagcaaatactatgggtatgcgacatggttcttatgacaaattggatgatgatggt
cttgctcctcctggaactagggtttcaggtgaggatgttatcataggaaagactacaccc
atggctcaggatgaggctccagggcaagctacatcgcgttacacacggcgtgaccacagc
ataagcttgcgccacagtgaaaccggcatagttgatcaggttctactgacgaccaatgcc
gatgggttgcggtttgttaaggtacgggtgaggtctgtcagaatacctcaaattggtgat
aaatttagtagcaggcatggacagaaggggacagtgggtatgacttatacccaggaagac
atgccgtggactgtggaaggggtgacccctgatataatcgtgaacccgcatgctattcct
tctcggatgacaattggtcagctcattgagtgtattatggggaaggttgcagctcacatg
ggaaaggaaggagatgctacaccttttacagatgtcacggtggacaatatcagtaaagct
cttcacagttgtgggtatcaaatgcgtggattcgagaccatgtataatggtcacacgggc
aggcggctcagcgctatgatattccttggccccacatactaccagagactgaagcatatg
gtcgacgataagatccattcacgtggacggggtccagtgcagatcctcacaaggcagcca
gctgagggacgatctcgtgatggtggtctacgcttcggggaaatggaacgagattgcatg
attgcccatggtgctgctcactttctgaaagaaagattgtttgaccagagtgatgcatat
agggttcatgtctgtgagcgttgtgggttaatagctattgcaaatctcaagaagaattcg
tttgagtgcaggggttgcaagaacaaaaccgacattgttcaggtttacattccttatgcc
tgcaagctgctgttccaagagctcatgtcgatggccatagcgccaagaatgctcacaaag
gacatcaagcctgccaaaaaccaaaagaagaaaggagcctga
DBGET
integrated database retrieval system
