Malus sylvestris (European crab apple): 126622728
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Entry
126622728 CDS
T09027
Name
(RefSeq) protein SUPPRESSOR OF PHYA-105 1-like
KO
K16240
protein suppressor of PHYA-105 1 and protein SPA1-related 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126622728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126622728
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Multi subunit type E3 associated proteins
126622728
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
WDR55
EIF3I
Beta-prop_WDR35_TULP_N
Beta-prop_WDR19_1st
Pkinase
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
PK_Tyr_Ser-Thr
WD40_like
Beta-prop_DCAF12
DUF5595
WD40_RFWD3
WDR54
Motif
Other DBs
NCBI-GeneID:
126622728
NCBI-ProteinID:
XP_050147421
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Position
1:complement(16080843..16086294)
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AA seq
1001 aa
AA seq
DB search
MDGMENFVDNMAANRVAVRNEKLKPKEVDPFHNVALEGQNLPESPVVSTMEGKDLSRCVT
SSSGFEPRWSANGMGQVVEELKLKHYRKPDSASSQECWQDPDPAVARGFRSKNFRGDSTS
LGNDQNLLRVRGELREMSPRVRSLKPLSSNHSEQEADKLSAYLRAEDSKIMSNNMLSIAK
KRLKTQSTNSNSQLLVKEMSKGKTISKFPEPYGGFGSQVVGQNDLKPRYGSEVASDAELK
ANANNDRLSSHVQNQSGTKSISYGISLREWLKPGSHKVDVAERLLIFRQIVELVDFAHSQ
GVPLQDLRPSRFILLPSNEIKYTGGSAIREPISIVNRDLINKRQSEQDADADAERILGGT
QTKMSEGNEDEYFIAGPKKFEYGELQFRMNSSYQNKLVAVQQGSTSAIVQLEEKWYTSPE
EFSERGCTLSSNVYALGVLLFELLCLCDSWEVHSALMWDLHDRILPPNFLSQNPLGAGFC
LWLLHPEPLSRPTTREILQSELMGGKQESASCDDFSKSADDFDAESEALLSFLSSLKDKK
QGHASKLVEEIRRLEEDINKFGGRPLSGISSDASLAHKEFHSDREQGSVSNMIETQLMMN
INQLGDAYASTRYQMRLKKTAPAARPDKEVLNNRDSWRHVRNGSQDSSTNQKSGDRLGAF
FDGLPKFSRFSKFEVCGTLRNRDLLNSSNVICCLSFDRDEEYIATAGVSKKIKIFDFDAL
VDNSLDIHYPVVEMPHKSKLSCVCWNNYFKNYLASSDYDGVVQMWDATTGQGFSQYVEHQ
RRAWCVDFSQADPKKFASGSDDCTVKLWSTNEKKSTNTIWNAANVCCVQFSEYSSNLVVF
GSADYKIYGYDLRNTRIPWCTLPGHGKAVSYVKFVDAETLVSASTDNTLKLWDLNQSTST
GSSPNACSLTFSGHTNEKNFVGLSVSDGYIACGSETNEVYSYYRSLPMPITSHKFGAIDP
VSGSEVGDCSGQFVSSVCWRRKSNILVAANSSGTLKLLQMV
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggatggtatggagaattttgtcgataacatggctgcaaatcgtgtagcagtaaggaat
gaaaagctcaagccaaaggaggttgatccttttcacaatgtagcactggagggtcaaaat
ctgcctgagtcgccggtggtgtccacaatggagggcaaggatttgagtagatgtgtaact
tcttcatctggatttgagccccgctggtctgcaaatggcatggggcaggtggtggaagaa
ttaaaattgaaacattataggaaaccagactcagcttctagtcaagaatgttggcaagat
ccagatccggcagtagcacgaggtttcagaagcaagaattttcgcggagattctacgtca
cttggcaatgatcagaatctgttgagagtaagaggcgagcttagagaaatgtctcctcgt
gtaaggagtctgaagccattgtcaagcaatcactctgagcaggaggcagataaactgtct
gcgtatttaagggctgaggacagcaagattatgtcaaacaatatgcttagtattgccaag
aagcgactgaagacccaatctacaaatagcaattctcagttacttgtaaaggaaatgtca
aagggaaaaacaatcagtaaatttccagaaccttatggtggctttggtagtcaggttgta
ggccagaatgatttaaagccccgttatggttctgaggtagctagtgatgcagagttgaaa
gcaaatgccaacaatgatcggctttcttcacatgtgcaaaatcagtctggcacaaaatct
atcagttacgggatcagcttgagagagtggcttaaacctgggagtcacaaagttgatgta
gctgaaaggctgctcatatttaggcagattgtggagttggttgattttgcacactctcag
ggtgttcccttgcaagacttacgaccatcgcgcttcattttgttgccatcaaatgagatt
aaatacacaggtggatcagccatcagagaaccaatcagtattgtgaaccgagatttgatt
aacaaaaggcaatccgagcaggatgcagatgcagatgctgagcgtattttaggtggaaca
cagacaaaaatgagtgaaggtaatgaggacgaatatttcatagctggtccaaaaaaattt
gagtatggtgaactccagttccgaatgaattcaagctaccaaaataaattggttgcagta
cagcaagggtcaacttctgcaattgttcagttggaagaaaaatggtataccagtccggag
gagttcagtgagagaggttgcacactttcttcaaatgtctatgcccttggggtccttctt
tttgagttgttgtgtctctgtgactcatgggaggtgcattccgcattgatgtgggatttg
cacgatcggattctgccaccaaattttctttctcaaaatccactcggagctggcttttgc
ttatggcttctacatcctgaacctttgtctcgtccaacaactagagagatcctgcagtct
gaactgatgggtggaaaacaagaatcggcttcttgtgacgatttctcaaaatctgctgat
gattttgatgcagaatcagaggcattacttagttttctcagctcattaaaagacaagaag
caaggtcatgcctctaagttagttgaagaaataagacgcttagaagaagatataaacaag
tttggggggaggcccttatcaggaatatcctcagatgcttccttagcacacaaggaattt
catagtgacagagaacagggttcagtgtcaaatatgattgagacgcaattgatgatgaat
atcaaccagttaggggatgcttacgcttccacaagataccagatgaggctaaagaaaact
gctcctgcagcacgccctgataaggaggtgttaaacaatcgagacagttggcgtcatgtg
cgaaatggtagtcaagattcaagcaccaaccagaaatcaggtgatcggcttggagccttt
tttgacggtttacccaagttttctcgctttagcaagtttgaagtatgtgggacattaaga
aacagagatcttctaaactctagcaatgtgatttgctgtttgagtttcgaccgtgatgag
gagtacattgctacggctggagtatcaaagaaaatcaagatctttgattttgatgcgctt
gtagacaattctttggatatccattatcctgtagttgaaatgccacacaaatctaagttg
agctgtgtttgctggaacaactattttaagaactatctggcttcatcggattatgatgga
gtcgtacagatgtgggatgcaactactggtcaaggattttctcagtatgtagagcaccaa
aggcgggcttggtgtgtcgacttctctcaagctgacccaaagaagtttgctagtggaagt
gatgactgtacagtgaaactctggagcactaatgagaaaaaatcaacaaacacaatctgg
aacgcagctaatgtatgttgtgttcagttctctgaatactcttccaatctcgtggttttt
ggatccgctgattacaaaatttatggctatgatcttcggaatactagaatcccttggtgc
actttacctggtcatggaaaagctgttagctatgtaaaatttgtagatgcggaaaccctt
gtttctgcatctacagacaacactctgaagctttgggatcttaaccaatctacctcaacc
ggatcgtctcccaatgcctgcagcttaacatttagcggtcacactaatgagaagaatttc
gtgggtttatctgtttcagatggatacatagcatgtggatcagaaactaacgaggtttat
agttattacagaagtctaccgatgcccatcacttcacataaatttggagcaattgatcct
gtttctggaagtgaggttggtgattgcagcgggcagtttgtctcgagtgtctgttggaga
agaaagtctaacatacttgttgctgccaactcaagtggaactttgaaattattgcagatg
gtgtga
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