Malus sylvestris (European crab apple): 126622865
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Entry
126622865 CDS
T09027
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126622865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126622865
03041 Spliceosome [BR:
msyl03041
]
126622865
03036 Chromosome and associated proteins [BR:
msyl03036
]
126622865
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
126622865
Spliceosome [BR:
msyl03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
126622865
Complex B
126622865
Complex C
U2 SnRNP specific factors
126622865
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
126622865
TFTC complex
126622865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML_2
WDR55
Motif
Other DBs
NCBI-GeneID:
126622865
NCBI-ProteinID:
XP_050147521
LinkDB
All DBs
Position
1:complement(21073083..21077976)
Genome browser
AA seq
1211 aa
AA seq
DB search
MYLYSLTLQRATGIVCAINGNFSGGKAQEIVVARGKVLDLLRPDENGKIQTLLSVEIFGA
IRSLAQFRLTGSQKDYIVVGSDSGRIVILEYNKEKNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMVGACEKQKLVYVLNRDTSARLTISSPLEAHKSHTIVYSICGVDCGFDNPM
FAAIELDYAEADQDSTGQAANEAQKHLTFYELDLGLNHVSRKWSDQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQDKPDLRAVIPRRADLPAERGVLIVSAAMHKQKSMFFFLLQ
TEYGDIFKVTLDHDNDKVSELKIKYFDTIPVTTSMCVLKSGFLFAASEFGNHSLYQFQAI
GEEPDVESSSATLMEMEEGFQPLFFQPRKLKNLVRIDQVESLMPIMDMKVNNLFEEETPQ
IFTLCGRGPRSSLRILRPGLAISEMAVSELPGVPSAVWTVKKNVSDEFDAYIVVSFANAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDSTIRILSLDPDDCMQILSVQSLSGVPESLLFLEVQASIGGEDGADHPASLFL
NAGLRSGILFRTVVDMVTGQLSDSRSRFLGLRAPKLFSISVRGKHAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEYAASFSSDQCSEGVVSVAGNALRVFTIERLGETFNETVIPLRYTP
RKFIIQLKRKLLVIIESDQGAFTAEEREAAKKECFEAAGLGDNGNGNVDQMENGGDEEDP
LADEHYGYPKAESDKWVSCIRVLDPKTATTTCLLELQDNEAAFSICTVNFHDKEYGTLLA
VGTAKGLQFWPKKSVTAGYIHIYRFLDDGKSLELLHKTQVDGVPLALCQFQGRLLAGIGP
VLRLYDLGKKRLLRKCENKLFPNTIASIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFA
DDCVPRWLTASFHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGRIKWEQGKLNGA
PNKVEEIVQYHVGDVVSCLQKASLIPGGGECIIYGTVMGSLGSLLAFTSRDDVDFFSHLE
MYMRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADELDRTPGEIL
KKLEEIRNKII
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcactctccagcgcgccaccggcatagtatgcgccatcaacggc
aatttctccggcggcaaggcccaggagatcgtcgtcgcccgcggcaaagttctcgacctt
ctccgtcccgacgaaaatggtaagatccagactctcctctctgttgaaattttcggcgca
attaggtcgttagctcagtttaggctcactggctctcagaaggactatattgttgtcggg
tccgattcgggtcggattgtgattctagagtataataaggagaagaatgtgtttgataag
attcaccaggagactttcgggaaatcgggttgtcgaaggatagttccgggtcagtatttg
gccattgaccccaaggggagggctgttatggttggggcatgtgagaagcagaagcttgtt
tacgttttgaatagggatacttctgctaggttgacgatttcgtctccgttggaggctcac
aagtcgcatacgattgtgtattcaatttgtggggttgattgtgggtttgataatcccatg
tttgctgccattgagttggattatgcggaagctgatcaggactctactgggcaggcggcg
aatgaggcgcagaagcatttgactttctatgagctcgatcttggcctcaatcacgtatca
aggaagtggtcagatcaggttgataatggtgcaaatatgctggtcactgttcctggaggt
ggggatgggccaagcggtgtattggtctgtgcggaaaattttgtgatttataagaaccag
gataaaccggatctcagggctgtgattcctaggcgtgcagatttgcctgcagagcgtggg
gttcttatagtttcagcggctatgcacaagcagaaatcaatgttcttttttcttttgcag
acagagtatggagatatatttaaggttactctggatcatgataacgacaaggtctcagaa
ttaaagatcaagtattttgatacaattccggttacaacttcaatgtgtgtgttaaaatct
gggtttttgtttgctgcgtcagagtttgggaatcactctttgtaccagttccaggcaata
ggggaagaacctgacgtggagtcttcatcagccacattgatggaaatggaagaaggtttc
cagcctttgtttttccagcccagaaaactaaaaaaccttgttaggattgatcaagttgag
agcttgatgccgataatggatatgaaggtcaataatctctttgaggaagaaacacctcaa
atatttacactttgtgggcggggtcctcgttcatccctcaggatactaagacctggttta
gctatcagtgagatggccgtgtcagagcttcctggtgtaccgagtgcggtctggacagtg
aagaagaatgtgtccgatgaatttgatgcatacattgtggtgtcatttgcaaatgctact
cttgtgctttcaattggtgagacagttgaagaagttagtgacagtgggtttcttgacact
accccatcacttgcagtttctttaataggtgatgattctctcatgcaagtgcacccaaat
ggaattaggcatattagggaagatggacgtattaatgaatggagaactcctggaaagagg
acgattgtaaaggttggctctaatagacttcaggtagttattgcactgagcggaggagaa
ctcatatattttgaggttgatatgacgggtcagttaatggaggtggagaaacatgaaatg
tctggagatgtagcctgtctagacattgcccctgtacctgaagggagacagagatctcgt
ttccttgccgttggttcatatgacagcaccattcgtattttgtcattggatcctgatgac
tgtatgcaaattcttagtgtgcaaagtctttctggagttccagaatctctcctctttctt
gaggttcaggcatcaattggtggggaggatggtgctgatcatcctgctagccttttcctt
aatgctggtttacgctctgggattttgttcagaacagtggtggatatggtcacaggtcaa
ctctctgattcccgttctcgattcttgggactaagagcaccaaagctattttctattagt
gtgagaggcaagcatgctatgctttgcttgtcaagtcggccctggcttggttatatccat
caaggacattttctcttaacacccctatcgtatgagacccttgaatatgctgcctcattt
tcatccgatcaatgttcggaaggtgtagtttctgttgctggaaatgctttgagggttttt
actattgaaagattgggagaaacatttaatgaaactgtgattccactgaggtacacccct
agaaagtttatcattcagctcaaacgaaagcttttggtaattattgaaagtgatcaagga
gcgttcacagcagaagagcgtgaagctgccaaaaaagagtgttttgaggctgcaggttta
ggtgacaatggaaacggtaatgtagatcagatggaaaatggcggggatgaggaggatccc
ttggctgatgagcactacgggtatcctaaggcagagtctgacaaatgggtgtcttgcatt
agagttcttgaccccaagacagcaactacaacatgtctgctggagcttcaggataacgaa
gctgcattcagtatctgtacagtgaatttccatgacaaggagtatggtacgcttttagct
gttggcacagcgaagggactgcagttttggccaaaaaagagtgtaacagcaggctatata
catatatatagattcctagatgatggaaagtcccttgaacttttgcacaagacacaagtg
gatggtgttcctcttgccttgtgccagtttcaaggaaggttactagctgggatcggacca
gtgctcagactctatgatttggggaagaaaagattactcaggaagtgtgagaataagctg
tttcccaacacaattgcgtcaatccaaacttatcgtgatcggatttatgtaggtgacatt
caagagtcattccactactgcaagtataggcgggatgagaatcaattgtatatctttgct
gatgattgtgttccaagatggcttacagcatccttccatatagattttgacaccatggca
ggtgcagacaagtttgggaatgtttattttgtgcggttaccacaggatgtttcagatgag
atagaagaagatccaacgggtgggaggataaaatgggagcagggaaagttgaatggcgct
cccaacaaagtagaggagatagtgcagtatcatgttggtgatgttgtcagctgcttgcag
aaggcatctctaattccaggtggtggggagtgcatcatctatggaactgtgatgggtagc
ttgggttccttacttgcgttcacctcacgtgatgatgttgacttcttttctcacttggag
atgtatatgaggcaggagcatccacccttgtgtggtagagatcacatggcttatagatca
gcgtatttcccggtcaaggatgtgattgatggagatctgtgtgagcagttcccaacattg
cccatggatctgcagagaaaaattgcagatgagttggatagaactcctggagagatactg
aagaagcttgaggaaattcgaaacaagatcatttaa
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