Malus sylvestris (European crab apple): 126623070
Help
Entry
126623070 CDS
T09027
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126623070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126623070
Enzymes [BR:
msyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
126623070
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126623070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
B_solenoid_ydck
Motif
Other DBs
NCBI-GeneID:
126623070
NCBI-ProteinID:
XP_050147814
LinkDB
All DBs
Position
5:complement(27937718..27955748)
Genome browser
AA seq
616 aa
AA seq
DB search
MASLPPFIRRRFLSTTTTTTNVSKKWAVKEVTKSNFSESLEEFKDHLSSSDFVAVSLQKT
GSYRAPWHRPRPFDTADTSYCKAKYAAERFQLLQFAACPFTLRASKLTPYPYNFVLFPRD
ELKMGMPTYSFSVQPSHLTSMAEEGFDFNACIYNGISYLSRAQESAAKARMGNPTTSSYV
MSSSSTHTVADTVFVERIKSRVKHWKSACKNTKKDNALLSSLRKIVMGSEIYGTRPCMNL
DVCSERQVQLALEMLKEFSDELVPLIIPAKGGGNQAVRVVLTSSTADKDLFERELQNLEE
EQNKRVRGFREVIDLISASQKPVVSHNSLNDFTVIHSEFLSPLPTNVDEFMGSLHSVFPH
ILDVNHLMKNIGPLRKMTNIPAAISYLNNHYFAPIDMEILPQESEGNIHRHNVVKMCYLF
AKLCSILKISDNAMVSNNAMLAPAIREYTNISNPCSDSPQESTNEDIRVWTKNMRKVSCD
QLVFLWGFRSGMTAGMIKSLLCKSHAVFSEEFDVRFVDKSCAIVVFWRRGLSETFLDAMS
SEEICDSLMEIASEGIRASSYETYKRVCRLGLWEADLAESLDKALEDSDYLMEANSATNS
KEICWSSDSAINFDDL
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctgcctccgtttatacggcgccgtttcctcagcaccaccaccaccaccacc
aatgtctcgaagaaatgggccgtgaaggaagtgactaagtccaatttttccgagtccctg
gaggagttcaaggaccacctgtccagctccgacttcgtggccgtctcgctgcagaaaacg
gggtcatatcgtgcgccgtggcaccgccctcggcccttcgacaccgccgacacgtcgtat
tgcaaggccaagtacgccgctgagcgcttccagctcctccagttcgccgcctgccctttc
actctcagagcctccaagcttactccttacccatacaactttgtcttgttcccaagggat
gaattgaagatggggatgccaacttatagcttttcagttcaaccgtcacatttgacttcc
atggcggaagaaggttttgatttcaatgcctgcatatataatggtatttcatacttgtct
agagcacaagaatctgcggctaaagctcggatggggaatccgactaccagcagctatgta
atgagctcttcttcgacccatactgttgctgatacggtttttgttgaaagaattaaatcg
cgagttaagcattggaaaagtgcatgtaaaaacacaaagaaagataatgctctgctgagt
tccttgagaaaaattgtaatgggaagtgaaatttacggaacaagaccctgcatgaatcta
gatgtttgcagtgaacgtcaagtgcagcttgctctggagatgttgaaagagttctctgat
gaacttgttcctttaataatcccagccaagggcggaggaaatcaggctgttcgtgttgtt
ttgacaagttctactgcggacaaggacttgtttgagagagagctccaaaaccttgaggag
gaacaaaacaagagagttcgtggatttcgagaggtgatcgatttgatttctgcttcacag
aaacctgttgtctcccacaattcccttaacgatttcacagttattcattcagagtttctc
tcacccctcccaactaatgtagacgagtttatgggttccttgcactcggtttttccccac
atacttgatgtcaaccatctgatgaagaatattggccctctaagaaagatgaccaatatt
cctgcagctatttcgtacttgaataatcattacttcgcacccattgatatggaaattttg
cctcaagaaagtgaaggcaacattcataggcataatgtggtgaagatgtgctatttgttt
gcaaagctctgctccattctgaaaatttccgacaatgctatggtatctaacaatgcaatg
ttggctccagccatcagagagtacacaaacatttccaatccgtgttctgacagcccccaa
gaatcaaccaatgaggatatcagagtctggacaaagaatatgagaaaggtcagctgtgat
caattggtattcttatggggattcagaagtggaatgactgcggggatgatcaagagcttg
ttgtgcaagtcacatgccgtcttctctgaagaatttgatgttcggtttgtggacaagagc
tgtgccattgttgttttctggcgacgtggtttatctgaaacttttttggatgccatgagc
agtgaagagatttgtgactctttaatggagatcgcttcagagggcataagagcatcaagt
tacgaaacttacaagagagtctgcaggttaggcttatgggaggcagatttagcggagtcc
ctagacaaagccttggaagactcggactaccttatggaagctaattcagcaacaaattct
aaagaaatttgttggtctagcgactcagcaataaattttgatgacttgtaa
DBGET
integrated database retrieval system
