Malus sylvestris (European crab apple): 126623093
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Entry
126623093 CDS
T09027
Symbol
LOC126623093
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03030
DNA replication
msyl03410
Base excision repair
msyl03420
Nucleotide excision repair
msyl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
126623093 (LOC126623093)
03410 Base excision repair
126623093 (LOC126623093)
03420 Nucleotide excision repair
126623093 (LOC126623093)
03430 Mismatch repair
126623093 (LOC126623093)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
msyl03032
]
126623093 (LOC126623093)
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126623093 (LOC126623093)
DNA replication proteins [BR:
msyl03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
126623093 (LOC126623093)
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
126623093 (LOC126623093)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_lid_RFC1
RCF1-5-like_lid
PTCB-BRCT
AAA_22
Rad17
AAA_30
Gp44_lid
AAA_19
AAA_18
nSTAND3
AAA_16
BRCT_2
RuvB_N
AAA_5
AAA_14
AAA_assoc_2
Zeta_toxin
AAA_17
HP_1247_M
AAA_24
Sigma54_activ_2
AAA_28
TsaE
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
126623093
NCBI-ProteinID:
XP_050147843
LinkDB
All DBs
Position
5:8300871..8313235
Genome browser
AA seq
953 aa
AA seq
DB search
MSQADIRKWFMKSHDKGNSKKPVVTTSQTPSTAKTEPKESARGDQDNSGRRKTSKYFPPD
KPTDDKETSKVPAKRKPHKDPDESIKPSPAKKAHKVIDDDNDEDDFVSPNSKKKSVDSTP
REKLKSTSGVGIPQKVTTIDEGGDDDAKAAKSPLKPAGRGRGGRGTSGGPTGGRGRGAGQ
GGFMNFGERKDPPHKGEKEVPEGAPDCLAALTFVISGTLDSLEREEAEDLIKRHGGRITG
SVSKKTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDMIRASIGAKVPVHETKKSVDDA
AAASLPNKSPKKVTLKKDLTGSSLASSASSKPLQSDASLARHKKQTTGHSTFTWTEKYRP
KVPNDIIGNQSLVKQLHDWLAHWNEQFLDTGNKKKGKNPTNSGAKKAVLLSGTPGIGKTT
SAKLVSQMLGFQAIEVNASDSRGKSDSKIEKGIGGSNANSIKELVSNKALSMDGSKHPKT
VLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPT
KQQMAKRLMQIASAEGLQVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQR
LLSSSKDEDISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYINYRPSSAV
KDDSGIKRMDLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIIPAALLRGQRETL
EQGERNFNRFGGWLGKNSTLGKNLRLLEDLHGHLLASRESSSGRETLRVEYLFLLLKRLT
VPLRELPKDEAVQEVVEFMNAYSISQDDFDTIVELSKYEGHPNPLDGILPAVKAALTKAY
KEGSKTRMVRAADFVTIPGMKKAPKKRIAALLEPSDVVIGENNDDTLVQSEDENSSDTED
LEGTAAGEKLQKELQSLNTKGVQVQFDLKGAPNTSAKKTPAGRGSGAGAKRKR
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggcagatattaggaagtggtttatgaagtcgcacgacaagggaaacagcaag
aaaccggtagtgactacttcacagactccttcaacagctaagacagagcctaaagaatca
gcgcgtggagatcaagacaactctggcaggaggaaaactagcaagtattttcccccagat
aagccaacagatgataaagaaacatctaaagttccagccaaaagaaagcctcacaaggat
cctgatgaatctattaaaccctcacctgcaaaaaaagctcacaaagttattgatgacgac
aacgatgaagacgattttgtctcgcctaattcgaagaagaaatcagttgattccactcct
agagagaaactgaaaagcacatctggcgtgggaatcccacagaaggttaccactattgat
gaaggtggcgatgatgatgcaaaggctgccaaatcacccctcaagccggctggtaggggt
cgtggtggaagaggtacttctggaggaccaaccggtggaagaggcagaggcgctggacaa
ggcggatttatgaactttggagaaaggaaagatcctccacacaaaggagaaaaggaagtt
cctgaaggtgctccagattgtttagctgccttgacttttgtaattagtggtacacttgac
agtttggaaagagaagaagcagaggatttgattaaacgtcatggcggtcgtattactgga
tctgtcagcaagaaaacgaattatcttttatgcgatgaagatattgagggaaggaaatcc
tctaaagctaaagaacttggtacggcttttcttactgaggatggattgtttgatatgatt
cgggcgtctatcggtgctaaagtacctgtacacgaaacaaagaaatctgtggatgatgct
gcagcagcatctttgcccaataaaagccctaagaaagtaacattaaagaaagatttgact
ggaagctcgttggcatcaagtgcatctagcaaaccattgcagtcagatgcctcccttgct
aggcataagaagcaaactaccggccattctacttttacttggacagaaaaatacaggcca
aaggttccaaacgacattattgggaatcagtcattggtaaagcagcttcatgattggttg
gcacattggaatgagcaatttcttgatactggaaataagaaaaagggaaaaaacccaaca
aattctggtgcaaaaaaggctgtacttttaagtggaacacctggtatagggaaaacgacg
tctgcaaagttagtcagtcagatgcttggtttccaggcaattgaggtaaatgctagtgac
agtcgtggtaaatctgattcaaagattgaaaagggaattggtggaagcaatgcgaattcg
attaaagagcttgtcagcaacaaggccctaagcatggatggatcaaagcatcccaaaact
gtgctgattatggatgaggttgatgggatgtctgctggagatcggggaggagttgctgat
cttattgctagcataaagatttcaaaaattcctattatctgcatttgtaatgatcgttac
agtcagaaactgaaaagtcttgtgaactactgtttgcttctcagctttcgcaaacctacc
aagcaacagatggcaaagaggttgatgcaaattgcaagtgctgaaggccttcaagttaat
gagattgctcttgaggaactggcagaaaaggttaatggagacatgcgaatggcagttaac
caattgcaatatatgagcctctcaatgtctgtcattaaatatgatgatgtacggcaacgc
ttattaagcagttcaaaggatgaagatatttcaccatttacagctgttgacaagctgttt
ggttttaatgctggaaagttgcgaatggatgagcgagttgacctgagcatgagtgatcct
gacctagtccctcttcttatccaggaaaactatatcaactacaggccaagttcggctgta
aaagatgatagtgggataaaacgtatggacttgattgcccgtgccgctgagtctattggc
aatggagatattttcaatgtacagattagaaaatatcggcaatggcagctttcccaaagt
gcttgtctttcatcctctataattcctgctgcattgttgcgggggcaaagagagacactt
gagcagggagaaaggaattttaatagatttggagggtggctgggaaagaattcaacgtta
gggaaaaatcttaggctcttggaagatttgcatggtcatcttcttgcttctcgtgaatct
agttcggggagggaaacactacgagttgaatacctttttcttcttctgaagcgattgacc
gtgccactacgtgaactgcctaaggatgaagctgtgcaggaagttgtggagttcatgaat
gcttactccattagtcaggatgactttgatactattgtggagttatccaaatatgagggg
cacccaaatccgctagatggcatactacctgctgtaaaagctgctttgacaaaagcttac
aaagaaggaagcaaaacaaggatggtacgagctgcagattttgttactattcctggaatg
aaaaaggcccctaagaagcggattgctgcccttttagaaccatctgatgttgtaattgga
gagaacaatgacgatactttggttcagagtgaagatgaaaattcgtcagatacagaggac
ttggaaggcactgctgctggtgagaagctgcaaaaggaacttcagagtttgaacacaaaa
ggagtgcaagtacaatttgatttgaagggtgcgccaaatacaagtgcaaagaagacacca
gctggaagaggttcaggagctggtgccaagagaaagagatga
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