KEGG   Malus sylvestris (European crab apple): 126623346
Entry
126623346         CDS       T09027                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03020  RNA polymerase
msyl03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    126623346
  09124 Replication and repair
   03420 Nucleotide excision repair
    126623346
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:msyl03021]
    126623346
   03400 DNA repair and recombination proteins [BR:msyl03400]
    126623346
Transcription machinery [BR:msyl03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     126623346
DNA repair and recombination proteins [BR:msyl03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      126623346
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 126623346
NCBI-ProteinID: XP_050148164
LinkDB
Position
5:46913890..46926673
AA seq 235 aa
MSEKGGKGFSLPKPSLKSTPPSSKDGKDDSSTKSKKGRRVQFDSEGSREPKSNFSSKFYR
PAAASGKADWGKGGKGDTIANAKKKEPQPLELKIEQELPKSVKCMMDCEAADILQGIQEQ
MVMLSKDPTIKIPVSFDKGLQYANSTSRYTHPQSGRHVLETLKKYGVKDGEVCVIANVCP
ETTDEVFALVPSLKTVYLYLCFKNAFPKLFGAKRSTLSQPLKDVLSELTRFKRAT
NT seq 708 nt   +upstreamnt  +downstreamnt
atgtcggagaaaggaggaaaggggttttctttgcctaaaccttcgctgaaatctacccct
cctagctcaaaggatggtaaggatgatagctcgacaaagtccaagaagggaagacgagtt
cagttcgattctgaaggttcccgggaacccaaatcaaacttttcgtcaaaattttatcgc
ccagctgctgcttcagggaaagctgattggggcaaggggggaaaaggagacacaatcgca
aatgctaaaaagaaagaaccacagccactggagctcaaaattgagcaggaacttccgaag
agtgtcaaatgtatgatggattgtgaggctgccgatatattacaaggcatccaggagcag
atggtcatgttgtctaaagatcctactattaaaatccctgtatcattcgacaagggactg
cagtatgccaacagcaccagccgttatacacatccccaatctgggagacacgttcttgag
actctaaaaaaatatggtgtcaaagatggagaggtatgtgtgattgccaatgtttgtcca
gaaaccaccgatgaagtttttgctttagtaccatccttgaagactgtttatctgtatctg
tgtttcaagaatgctttcccgaagctatttggggctaagagaagcacgctcagccaacca
ctaaaagatgttttaagtgagctgactaggtttaaaagggcaacataa

DBGET integrated database retrieval system