Malus sylvestris (European crab apple): 126623504
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Entry
126623504 CDS
T09027
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
126623504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126623504
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
126623504
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
DUF4239
Motif
Other DBs
NCBI-GeneID:
126623504
NCBI-ProteinID:
XP_050148362
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Position
5:44218278..44221695
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AA seq
568 aa
AA seq
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MDSQRKKVLEQVLNLVTSPKDRSSVSLVCKDWYDVERHSRRHVFIGNCYSVSPEIVTRRF
PNIRSVTLKGRPRFSDFNLVPPNWGGDVRPWLDVFAAEYPQLEELRLKRMTVSDESLEFL
AASFADFKALSLLSCDGFSTDGLEAIATDCKNLTELDIQENDIDDKSGDWLSCFPENFTS
MEILNFSCLNSDVDFDALESLVSRCKSLKVLKVNKTVTLDQLRSLLNHAPQLLELGTGSF
WQELTPSQHSELERVFSNCKNLHALSGLWQATALYLPVLYPVCTNLTFLNLSYAATLQSW
DLAKLVANCPHLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPSSPDGDDIVDGVTESGF
VAVSHGCPRLRYVLYFCWQMTNAAVATVAQNCPDITHFRLCIMTPAKPDHLTGEPMDEAF
GAVVKTCTKLERLSVSGLLTDLTFEYIGKYAKNLEYLSVAFAGDSDQGMQYVMNGCPKLK
KLEIRDCPFGDTALLSGLEKYESMRSLWMSACLVTMNACRSLASKVRRLNVEVMKDDENG
DDSQADKVYVYRSIAGPRKDAPAFVLTF
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggattcccaaagaaagaaggttctggagcaggtcctgaacctggtcacctcacccaag
gaccggagctccgtctcgctggtctgcaaggactggtacgacgtggagagacactctcgc
cgccacgtcttcatcggaaactgctactccgtgtcgccggagatcgtgacccggcggttt
cccaacatccggagcgtgaccctgaaggggaggccgcggttctcggacttcaatctggtg
cctccgaattggggcggcgacgttcggccgtggctggatgtgttcgctgctgaatacccg
cagctcgaggagctgaggctgaagaggatgacggtgagtgatgagagccttgagttcttg
gctgcttcttttgctgacttcaaagctctgtcgctgctcagctgtgacgggttcagcacc
gatggccttgaagccattgccactgactgcaagaatttgactgagctcgacatacaggaa
aacgacatcgatgataaaagtggagactggttaagctgcttccctgaaaacttcacatca
atggaaatactaaacttttcctgcctgaattccgatgtcgacttcgatgctcttgagagt
cttgtaagtaggtgcaaatcactgaaggtgttaaaggttaataaaactgtaaccttggac
caactacgaagtcttctcaaccatgctcctcaacttctggagctaggcaccggctcgttc
tggcaagagctgacaccctctcagcattcagaactcgaaagagtgtttagcaactgcaag
aatttacatgcactctctggtttatggcaagcaacagctctttatctcccggttctgtat
cctgtctgtacgaatcttactttcttgaatttgagctatgcagcaactttgcaaagttgg
gaccttgctaagcttgttgctaattgtccacatctccggcgcctttgggtgctggacaca
gtggaagacaaagggttggaggctgttggatcaaactgtcctttgcttgaggaactccgt
gttttcccttcttctcccgatggagatgatattgttgatggggtgactgaatctgggttt
gttgctgtgtcccatggctgtccaagactccgctatgtcctctacttttgttggcagatg
actaatgccgctgtagcaactgttgcacaaaactgccctgatataacccacttccgtctc
tgcataatgaccccagcaaaaccagatcacctgacgggtgagcctatggatgaggctttt
ggtgcagtggtgaagacttgcactaaactcgaaaggctttccgtttcaggtttactgacc
gaccttacatttgaatacattgggaaatatgccaagaatttggaatacctttcagtagcc
ttcgctggagacagtgatcaggggatgcagtacgtgatgaatggttgccccaagctcaag
aaacttgagatacgggactgcccgtttggggacacagctttgctctcaggtttagagaaa
tatgaatctatgaggtcactttggatgtcagcctgccttgtgacaatgaatgcctgtcgg
tcattggcaagtaaggtgcggaggttgaatgttgaggtgatgaaagatgatgaaaatggt
gatgacagtcaggctgataaagtctatgtttaccgttctattgccgggccaagaaaggat
gccccggcttttgttctcaccttctga
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