Malus sylvestris (European crab apple): 126623570
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Entry
126623570 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126623570
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126623570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126623570
03041 Spliceosome [BR:
msyl03041
]
126623570
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126623570
Spliceosome [BR:
msyl03041
]
Complex B
Other components
Prp19-related factors
126623570
Complex C
126623570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
NRDE-2
HAT
Motif
Other DBs
NCBI-GeneID:
126623570
NCBI-ProteinID:
XP_050148442
LinkDB
All DBs
Position
5:complement(44152534..44157361)
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AA seq
920 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLVNTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLAAVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDDEEDKENGVAEDGNEEEEDLRLDINLSVAELEKKMLDGFWLHDDKDIDL
RLARLDHLMDRRPVLANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEEHKYFEDAFKVYQKGTKIFKYPHVKDIWVTYLSRFVK
RYGKKELERARELFEEAVQAAPADAKKPMYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTRDIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
GVYTFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQRLNMDEAKDKLKQAGVPEDEMAALERQLAPVANDTTTKDSSRIGFVSAGAIQQTD
GGIKVTANPEDIELPEENDSEDEERVEIQIAQKEVPDAVFGELANKRKEAEKDEGGDADT
KDDGSRLGALERIKRLKRGA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgatctctcaggagctatacccatcgcaagacgacctgctctacgaagaggagctt
ctccgcaacccattcagcctcaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaagaagcgcttcataatctacgagcgagccctcaaggctctgcccggaagctac
aagctctggtacgcttacctccgcgaaagactcgagcttgtaaggaacttgcccatcact
cactcgcagtatgaaacactagtcaacacgtttgaacgagccctagtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactttgacggagcagaaattggtcaccaag
actcgccggacctttgacagagcgctgtgtgctcttcccgtgacgcagcacgatcgcatt
tgggagccctacctcgtgttcgtgagccaaaagggcatcccaatcgagacctcgcttcgg
gtttatcgcaggtatttgaaatatgaccctacccatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggctggctgctgtgttgaatgatgat
aagttttactcgataaaggggaagacgaaacataggctgtggctagaattgtgtgatttg
cttactaagcatgccaccgaggtttcgggcctcaatgtggatgctataattagaggtggg
attaggaagtttacagatgaggtggggcggttgtggacctctcttgcggactattacatt
agaaggaatttgcatgagaaggcgagggatatattcgaggagggtatgacaactgtggta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtgctt
gcccataagatggaaactgctgatttgagtgatgatgaggaggacaaagagaatggggtt
gcggaggatggaaatgaggaggaagaagatcttcgattggatattaacttgtctgtggct
gagcttgagaagaaaatgcttgatgggttttggttacatgatgataaggatatagatttg
agattagctcgattggaccatctcatggatagaagacctgtactagcaaatagtgttctt
ttacgacaaaatcctcataatgtagagcagtggcaccgaagagtgaagctttatgagggc
aatcccaccaagcagatacttacttacactgaggcagtgaggacaattgatccaatgaaa
gcggttgggaagcctcacactttgtgggttgcttttgctaagttgtacgagaaccacaat
gatattgtcaatgccagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctgtggtgtgagtgggcagaaatggaattgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcaccggttcagatgaagctgcataaatgcttgaggatt
tgggccttttatgtggacttggaggagagcctgggtaaattagagtccactcgagctgtt
tacgagaggatattggatttgaaaatagccacaccgcagatcataatcaattatgcatca
cttcttgaggagcataaatactttgaagatgcgttcaaggtgtatcaaaaaggtactaaa
atattcaagtatccacatgtcaaagacatatgggttacatatctctctagatttgtaaag
agatatgggaagaaagaacttgagcgcgcaagagagctatttgaggaggctgttcaagcg
gcccctgctgatgcgaagaagcctatgtatcttcaatatgcaaagctggaggaggattat
ggcctatcaaagcgggcgatgaaagtctatgatgaagcaacgaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctatattgcccgtgccacagagatatttggcgtccca
aaaacaagggatatataccagcaggccatagattctggtcttccagacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtgtatacatttgcgtcgcagttttcagatccacgatctgatgtggatttctggaac
aaatggcatgagtttgaagtgcagcacggaaatgaagataccttccgggagatgcttcga
attaaacgaagtgtttccgcaagctatagccagacgcactttattctacccgagtatatg
atgcaaaaggatcagaggctgaacatggacgaggcaaaagacaagttgaaacaggcagga
gtccccgaagatgaaatggctgctctagagaggcagttggcacctgtggccaacgatact
accactaaagatagcagtagaataggctttgtgagtgctggagcaattcaacagaccgac
ggagggatcaaagttaccgcaaatcctgaagacattgagctaccggaagaaaatgattca
gaagacgaggaaagggtggagattcaaattgcacagaaggaggtcccggatgctgttttt
ggagagttggctaacaagagaaaggaggccgaaaaagacgagggcggagatgctgatacc
aaggacgatggcagccgccttggtgcccttgagagaataaaaaggctaaaacgaggcgcc
tga
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